Variant report
| Variant | rs28420755 |
|---|---|
| Chromosome Location | chr9:104448806-104448807 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:104441179..104443367-chr9:104448568..104451134,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10114871 | 0.86[AFR][1000 genomes] |
| rs10117050 | 0.87[AFR][1000 genomes] |
| rs10119079 | 0.87[AFR][1000 genomes] |
| rs10119283 | 0.82[AFR][1000 genomes] |
| rs10120736 | 0.82[AFR][1000 genomes] |
| rs10121691 | 0.82[AFR][1000 genomes] |
| rs10122077 | 0.87[AFR][1000 genomes] |
| rs10123334 | 0.87[AFR][1000 genomes] |
| rs10125809 | 1.00[AFR][1000 genomes] |
| rs10156603 | 0.87[AFR][1000 genomes] |
| rs10989575 | 1.00[AFR][1000 genomes] |
| rs10989593 | 0.87[AFR][1000 genomes] |
| rs11506966 | 1.00[AFR][1000 genomes] |
| rs12339890 | 0.82[AFR][1000 genomes] |
| rs12340167 | 1.00[AFR][1000 genomes] |
| rs12342952 | 0.87[AFR][1000 genomes] |
| rs12343034 | 0.82[AFR][1000 genomes] |
| rs12343188 | 1.00[AFR][1000 genomes] |
| rs12344042 | 1.00[AFR][1000 genomes] |
| rs12344841 | 1.00[AFR][1000 genomes] |
| rs12346815 | 1.00[AFR][1000 genomes] |
| rs28436645 | 0.87[AFR][1000 genomes] |
| rs28456110 | 0.82[AFR][1000 genomes] |
| rs28504973 | 0.86[AFR][1000 genomes] |
| rs28612816 | 1.00[AFR][1000 genomes] |
| rs28621686 | 1.00[AFR][1000 genomes] |
| rs28631285 | 0.82[AFR][1000 genomes] |
| rs28680751 | 0.87[AFR][1000 genomes] |
| rs28687945 | 1.00[AFR][1000 genomes] |
| rs28736781 | 0.87[AFR][1000 genomes] |
| rs58800610 | 0.82[AFR][1000 genomes] |
| rs73496772 | 1.00[AFR][1000 genomes] |
| rs73502933 | 1.00[AFR][1000 genomes] |
| rs73504933 | 0.82[AFR][1000 genomes] |
| rs73504976 | 0.82[AFR][1000 genomes] |
| rs73658427 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1046975 | chr9:104167583-104659873 | Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv949579 | chr9:104229820-104512923 | Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv831672 | chr9:104300755-104480849 | Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:104446400-104451200 | Weak transcription | Fetal Lung | lung |
| 2 | chr9:104446400-104451800 | Weak transcription | Fetal Brain Male | brain |
