Variant report

Variant	rs7046793
Chromosome Location	chr9:5823285-5823286
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:5816098..5820719-chr9:5821710..5826466,5	MCF-7	breast:
2	chr9:5822601..5825706-chr9:5827337..5829629,4	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10975340	1.00[EUR][1000 genomes]
rs1141025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1260128	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1260130	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1260132	1.00[EUR][1000 genomes]
rs1260134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1260135	1.00[EUR][1000 genomes]
rs1745887	1.00[EUR][1000 genomes]
rs1776008	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2476262	1.00[EUR][1000 genomes]
rs2760408	1.00[EUR][1000 genomes]
rs2760409	1.00[EUR][1000 genomes]
rs2760410	1.00[EUR][1000 genomes]
rs2797512	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2797514	1.00[EUR][1000 genomes]
rs2797516	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797517	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2797519	1.00[EUR][1000 genomes]
rs58370080	1.00[EUR][1000 genomes]
rs6477001	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6477002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7037680	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7042100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7042539	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73377834	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017103	chr9:5509431-5987907	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv539965	chr9:5509431-5987907	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv892151	chr9:5602528-5841438	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv948847	chr9:5712626-6417677	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	esv3331803	chr9:5766129-5905103	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	esv2224698	chr9:5823285-5823286	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:5779200-5832200	Weak transcription	Fetal Brain Male	brain
2	chr9:5779600-5827800	Weak transcription	Small Intestine	intestine
3	chr9:5784200-5831600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:5786800-5832200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:5787000-5830200	Weak transcription	Dnd41	blood
6	chr9:5787400-5832000	Weak transcription	Fetal Brain Female	brain
7	chr9:5787600-5831600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:5787600-5832000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:5787600-5832200	Weak transcription	Esophagus	oesophagus
10	chr9:5789800-5825200	Weak transcription	Gastric	stomach
11	chr9:5790000-5824000	Weak transcription	Pancreas	Pancrea
12	chr9:5794600-5825600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:5797400-5831400	Weak transcription	Psoas Muscle	Psoas
14	chr9:5798400-5831200	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:5799800-5824000	Weak transcription	Aorta	Aorta
16	chr9:5799800-5825200	Weak transcription	Brain Angular Gyrus	brain
17	chr9:5799800-5825400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:5799800-5831600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:5799800-5831800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:5799800-5831800	Weak transcription	HUVEC	blood vessel
21	chr9:5800400-5826400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr9:5801200-5823800	Weak transcription	Fetal Heart	heart
23	chr9:5801200-5824800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:5802000-5824200	Weak transcription	Thymus	Thymus
25	chr9:5802000-5828200	Weak transcription	Stomach Mucosa	stomach
26	chr9:5802200-5825200	Weak transcription	Fetal Lung	lung
27	chr9:5802200-5831200	Weak transcription	Colonic Mucosa	Colon
28	chr9:5802200-5831600	Weak transcription	Fetal Kidney	kidney
29	chr9:5802800-5831400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:5809000-5823800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr9:5810200-5831800	Weak transcription	Brain Germinal Matrix	brain
32	chr9:5810400-5823800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr9:5810800-5825600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr9:5810800-5829600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr9:5812000-5832200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr9:5812200-5824000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr9:5812600-5824200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:5813000-5832000	Weak transcription	NHDF-Ad	bronchial
39	chr9:5813200-5832200	Weak transcription	Lung	lung
40	chr9:5813400-5828400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr9:5814600-5823400	Weak transcription	Brain Hippocampus Middle	brain
42	chr9:5814600-5831800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:5816200-5831800	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr9:5816400-5825400	Strong transcription	Primary T cells from cord blood	blood
45	chr9:5816600-5830000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:5817600-5825800	Strong transcription	Fetal Intestine Large	intestine
47	chr9:5817600-5827000	Strong transcription	Liver	Liver
48	chr9:5817800-5825400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr9:5817800-5831800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr9:5818200-5823800	Weak transcription	Ovary	ovary

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