Variant report

Variant	rs73377834
Chromosome Location	chr9:5736752-5736753
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10975340	1.00[EUR][1000 genomes]
rs1141025	1.00[EUR][1000 genomes]
rs1260128	1.00[EUR][1000 genomes]
rs1260130	1.00[EUR][1000 genomes]
rs1260132	1.00[EUR][1000 genomes]
rs1260134	1.00[EUR][1000 genomes]
rs1260135	1.00[EUR][1000 genomes]
rs1745887	1.00[EUR][1000 genomes]
rs1776008	1.00[EUR][1000 genomes]
rs2476262	1.00[EUR][1000 genomes]
rs2760408	1.00[EUR][1000 genomes]
rs2760409	1.00[EUR][1000 genomes]
rs2760410	1.00[EUR][1000 genomes]
rs2797512	1.00[EUR][1000 genomes]
rs2797514	1.00[EUR][1000 genomes]
rs2797516	1.00[EUR][1000 genomes]
rs2797519	1.00[EUR][1000 genomes]
rs34368016	0.85[AFR][1000 genomes]
rs58370080	1.00[EUR][1000 genomes]
rs59085085	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6477001	1.00[EUR][1000 genomes]
rs6477002	1.00[EUR][1000 genomes]
rs7037680	1.00[EUR][1000 genomes]
rs7042100	1.00[EUR][1000 genomes]
rs7046793	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017103	chr9:5509431-5987907	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv539965	chr9:5509431-5987907	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1019444	chr9:5598677-5807009	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv892151	chr9:5602528-5841438	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv892153	chr9:5692233-5742450	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892154	chr9:5692233-5748232	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv6462	chr9:5699178-5743953	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv948847	chr9:5712626-6417677	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:5683000-5742000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr9:5702000-5747600	Weak transcription	Colonic Mucosa	Colon
3	chr9:5709400-5738800	Weak transcription	Fetal Heart	heart
4	chr9:5709400-5739000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:5709400-5746800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr9:5709400-5747000	Weak transcription	K562	blood
7	chr9:5709400-5756400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr9:5709400-5765600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:5709600-5743800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:5711000-5747600	Weak transcription	Hela-S3	cervix
11	chr9:5711800-5763200	Weak transcription	Brain Angular Gyrus	brain
12	chr9:5713800-5747200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr9:5714800-5763400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:5717600-5738800	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:5719400-5778200	Weak transcription	Stomach Mucosa	stomach
16	chr9:5719600-5748600	Weak transcription	Small Intestine	intestine
17	chr9:5722400-5743000	Weak transcription	HUVEC	blood vessel
18	chr9:5722600-5741800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:5722600-5762800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:5723000-5738600	Weak transcription	HSMMtube	muscle
21	chr9:5727200-5778200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr9:5728200-5741600	Weak transcription	Brain Substantia Nigra	brain
23	chr9:5728400-5747000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:5728400-5747000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:5728600-5738000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr9:5728600-5738800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:5728600-5738800	Weak transcription	Thymus	Thymus
28	chr9:5728600-5739400	Weak transcription	Ovary	ovary
29	chr9:5728600-5741200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:5728600-5757400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:5728600-5762000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:5728600-5762800	Weak transcription	Spleen	Spleen
33	chr9:5728600-5778600	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr9:5728800-5738600	Weak transcription	Fetal Stomach	stomach
35	chr9:5728800-5738800	Weak transcription	Fetal Brain Female	brain
36	chr9:5728800-5740400	Weak transcription	Fetal Intestine Small	intestine
37	chr9:5728800-5743400	Weak transcription	Left Ventricle	heart
38	chr9:5728800-5777800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:5729000-5743000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr9:5729000-5747400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr9:5729200-5738800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr9:5729200-5743000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr9:5729200-5745000	Weak transcription	Psoas Muscle	Psoas
44	chr9:5729200-5747200	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr9:5729200-5749000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr9:5729400-5738000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr9:5729400-5739200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr9:5731000-5743200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr9:5731400-5741400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:5732000-5738000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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