Variant report

Variant	rs7047826
Chromosome Location	chr9:21850044-21850045
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10811629	0.90[AFR][1000 genomes]
rs10965161	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10965162	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965164	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11523031	0.87[AFR][1000 genomes]
rs12554745	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4454372	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4636295	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4977567	0.92[AFR][1000 genomes]
rs4977733	0.90[AFR][1000 genomes]
rs4977734	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62556496	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62556497	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7850937	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7851133	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7868783	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21832200-21852400	Weak transcription	Stomach Mucosa	stomach
2	chr9:21837200-21850400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:21839400-21854400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:21841400-21858800	Weak transcription	Colonic Mucosa	Colon
5	chr9:21841600-21854200	Weak transcription	Hela-S3	cervix
6	chr9:21841600-21854400	Weak transcription	NHLF	lung
7	chr9:21841600-21854600	Weak transcription	NHDF-Ad	bronchial
8	chr9:21841600-21858400	Weak transcription	Spleen	Spleen
9	chr9:21841800-21852200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr9:21841800-21852200	Weak transcription	Pancreas	Pancrea
11	chr9:21841800-21852200	Weak transcription	HepG2	liver
12	chr9:21841800-21852400	Weak transcription	Small Intestine	intestine
13	chr9:21841800-21854600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:21841800-21854800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr9:21841800-21854800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:21841800-21855400	Weak transcription	Gastric	stomach
17	chr9:21841800-21856200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr9:21841800-21856400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr9:21841800-21858600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr9:21841800-21864600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:21842000-21850200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:21842000-21852800	Weak transcription	HMEC	breast
23	chr9:21842000-21854600	Weak transcription	HSMMtube	muscle
24	chr9:21842000-21854600	Weak transcription	NHEK	skin
25	chr9:21842000-21854600	Weak transcription	Osteobl	bone
26	chr9:21842000-21855000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr9:21842000-21857800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr9:21842000-21858400	Weak transcription	Right Ventricle	heart
29	chr9:21846000-21854800	Weak transcription	Fetal Kidney	kidney
30	chr9:21846600-21869800	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr9:21846800-21853200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:21847400-21850200	Strong transcription	Ovary	ovary
33	chr9:21847600-21871600	Strong transcription	Dnd41	blood
34	chr9:21847800-21850200	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr9:21847800-21852400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:21847800-21854200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:21848000-21852600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr9:21848000-21869600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr9:21848200-21856200	Strong transcription	Primary T cells from cord blood	blood
40	chr9:21848400-21854200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr9:21848800-21851000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr9:21848800-21852400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr9:21848800-21852800	Weak transcription	Liver	Liver
44	chr9:21848800-21854000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr9:21848800-21854200	Weak transcription	Thymus	Thymus
46	chr9:21848800-21854200	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr9:21848800-21854600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr9:21848800-21854600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr9:21848800-21854600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr9:21848800-21854800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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