Variant report

Variant	rs7851133
Chromosome Location	chr9:21846327-21846328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10757257	0.83[GIH][hapmap]
rs10811629	0.89[ASW][hapmap];0.84[GIH][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10965161	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10965162	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10965164	0.91[AMR][1000 genomes]
rs11523031	0.87[AFR][1000 genomes]
rs11526324	0.80[MEX][hapmap]
rs12554745	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3802394	0.84[MEX][hapmap]
rs3900787	0.83[GIH][hapmap];0.82[YRI][hapmap]
rs3922992	0.84[YRI][hapmap]
rs4454372	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4636295	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4977567	0.92[AFR][1000 genomes]
rs4977733	0.90[AFR][1000 genomes]
rs4977734	1.00[ASW][hapmap];0.83[CEU][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62556496	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62556497	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7047826	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7850937	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868783	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7851133	MTAP	cis	parietal	SCAN
rs7851133	MTAP	cis	multi-tissue	Pritchard

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21832200-21852400	Weak transcription	Stomach Mucosa	stomach
2	chr9:21837200-21850400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:21838200-21848000	Weak transcription	Brain Anterior Caudate	brain
4	chr9:21838400-21849000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:21839400-21854400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:21839600-21846600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:21840200-21846800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr9:21840400-21846600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr9:21840600-21849000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr9:21840800-21848800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:21841400-21858800	Weak transcription	Colonic Mucosa	Colon
12	chr9:21841600-21847600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:21841600-21847800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr9:21841600-21854200	Weak transcription	Hela-S3	cervix
15	chr9:21841600-21854400	Weak transcription	NHLF	lung
16	chr9:21841600-21854600	Weak transcription	NHDF-Ad	bronchial
17	chr9:21841600-21858400	Weak transcription	Spleen	Spleen
18	chr9:21841800-21846600	Weak transcription	Fetal Intestine Small	intestine
19	chr9:21841800-21847400	Weak transcription	Colon Smooth Muscle	Colon
20	chr9:21841800-21847600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:21841800-21847600	Weak transcription	Dnd41	blood
22	chr9:21841800-21847600	Weak transcription	HSMM	muscle
23	chr9:21841800-21847600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr9:21841800-21847800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:21841800-21847800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:21841800-21847800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:21841800-21847800	Weak transcription	Brain Hippocampus Middle	brain
28	chr9:21841800-21847800	Weak transcription	Fetal Stomach	stomach
29	chr9:21841800-21848000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr9:21841800-21848000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:21841800-21848000	Weak transcription	Lung	lung
32	chr9:21841800-21848200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr9:21841800-21848600	Weak transcription	Fetal Brain Male	brain
34	chr9:21841800-21848600	Weak transcription	Thymus	Thymus
35	chr9:21841800-21849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr9:21841800-21852200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr9:21841800-21852200	Weak transcription	Pancreas	Pancrea
38	chr9:21841800-21852200	Weak transcription	HepG2	liver
39	chr9:21841800-21852400	Weak transcription	Small Intestine	intestine
40	chr9:21841800-21854600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr9:21841800-21854800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:21841800-21854800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr9:21841800-21855400	Weak transcription	Gastric	stomach
44	chr9:21841800-21856200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr9:21841800-21856400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr9:21841800-21858600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr9:21841800-21864600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:21842000-21847200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:21842000-21847400	Weak transcription	Ovary	ovary
50	chr9:21842000-21847600	Weak transcription	Adipose Nuclei	Adipose

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