Variant report

Variant	rs7047899
Chromosome Location	chr9:21857303-21857304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:21857200-21857350	GM12872	blood:	n/a	n/a
2	ARID3A	chr9:21856247-21857340	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
MTAP	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10811631	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs16938590	1.00[CEU][hapmap];0.87[MEX][hapmap]
rs4399022	0.92[JPT][hapmap]
rs66524586	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72691580	0.95[ASN][1000 genomes]
rs72691585	0.85[EUR][1000 genomes]
rs72691587	0.85[EUR][1000 genomes]
rs72691594	0.82[EUR][1000 genomes]
rs73440467	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7854890	0.85[EUR][1000 genomes]
rs7871127	0.88[CHB][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv892745	chr9:21857244-22006273	Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21841400-21858800	Weak transcription	Colonic Mucosa	Colon
2	chr9:21841600-21858400	Weak transcription	Spleen	Spleen
3	chr9:21841800-21858600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:21841800-21864600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:21842000-21857800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr9:21842000-21858400	Weak transcription	Right Ventricle	heart
7	chr9:21846600-21869800	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:21847600-21871600	Strong transcription	Dnd41	blood
9	chr9:21848000-21869600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:21848800-21861400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:21848800-21866000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:21849000-21858200	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:21849000-21858400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:21849000-21859600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:21849000-21859600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:21849000-21861800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:21849000-21862200	Strong transcription	Fetal Muscle Trunk	muscle
18	chr9:21849000-21864200	Weak transcription	Brain Germinal Matrix	brain
19	chr9:21849000-21865800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:21849000-21868200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr9:21849000-21870000	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr9:21849000-21870200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:21849200-21866200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:21849600-21864600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:21850000-21859400	Weak transcription	Brain Angular Gyrus	brain
26	chr9:21850400-21863800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:21851400-21866800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:21852400-21857400	Enhancers	Stomach Mucosa	stomach
29	chr9:21852600-21866000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:21853000-21857600	Genic enhancers	HepG2	liver
31	chr9:21853600-21864600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr9:21853800-21862600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr9:21853800-21866800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr9:21854000-21859800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
35	chr9:21854000-21862400	Strong transcription	Fetal Thymus	thymus
36	chr9:21854000-21864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:21854200-21860400	Strong transcription	Thymus	Thymus
38	chr9:21854200-21861800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr9:21854200-21861800	Strong transcription	Primary B cells from cord blood	blood
40	chr9:21854200-21862200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr9:21854200-21862200	Strong transcription	Fetal Muscle Leg	muscle
42	chr9:21854200-21862200	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr9:21854200-21862400	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr9:21854200-21863000	Strong transcription	Hela-S3	cervix
45	chr9:21854200-21863200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr9:21854200-21865800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:21854200-21866000	Strong transcription	Adipose Nuclei	Adipose
48	chr9:21854200-21870200	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr9:21854400-21857400	Enhancers	Pancreas	Pancrea
50	chr9:21854400-21857600	Genic enhancers	NHLF	lung

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