Variant report

Variant	rs72691594
Chromosome Location	chr9:21905429-21905430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16938590	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66524586	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66741679	0.81[ASN][1000 genomes]
rs7047899	0.82[EUR][1000 genomes]
rs72691585	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72691587	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73440467	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7854890	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7859207	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv892745	chr9:21857244-22006273	Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21887200-21919000	Weak transcription	Hela-S3	cervix
2	chr9:21891000-21906000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:21891800-21907200	Weak transcription	Left Ventricle	heart
4	chr9:21894200-21908200	Weak transcription	HSMM	muscle
5	chr9:21895400-21909400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:21901000-21908200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:21901000-21908200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:21902400-21906200	Weak transcription	Primary T cells from cord blood	blood
9	chr9:21903800-21906400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:21903800-21908800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:21904000-21905800	Enhancers	NHDF-Ad	bronchial
12	chr9:21904400-21907200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:21904400-21907200	Weak transcription	Gastric	stomach
14	chr9:21904400-21914000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:21904600-21908000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:21904800-21906000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:21904800-21919400	Weak transcription	NH-A	brain
18	chr9:21905200-21909200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:21905200-21919400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:21905400-21906400	Weak transcription	Osteobl	bone
21	chr9:21905400-21907200	Weak transcription	Ovary	ovary
22	chr9:21905400-21909200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:21905400-21931000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links