Variant report

Variant	rs7048338
Chromosome Location	chr9:93819576-93819577
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10761105	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2184540	0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs296641	0.81[JPT][hapmap]
rs7027785	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7874712	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93810200-93823000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:93818400-93819800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:93818600-93820200	Enhancers	Hela-S3	cervix
4	chr9:93818600-93821800	Weak transcription	HMEC	breast
5	chr9:93818600-93822000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:93818800-93820000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:93819000-93819600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:93819000-93820400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:93819000-93821800	Weak transcription	A549	lung
10	chr9:93819200-93819800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:93819200-93819800	Enhancers	NHDF-Ad	bronchial
12	chr9:93819200-93820000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:93819200-93823000	Enhancers	HUVEC	blood vessel
14	chr9:93819400-93820000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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