Variant report

Variant	rs7049753
Chromosome Location	chrX:109644409-109644410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:109601873..109604381-chrX:109642165..109645095,2	K562	blood:
2	chrX:109633842..109636110-chrX:109643324..109646183,3	K562	blood:
3	chrX:109637443..109639454-chrX:109642435..109645799,3	K562	blood:
4	chrX:109489110..109490955-chrX:109642772..109644481,2	MCF-7	breast:
5	chrX:109644001..109647691-chrX:109648578..109653644,9	MCF-7	breast:
6	chrX:109639728..109642664-chrX:109644405..109645994,2	K562	blood:
7	chrX:109402727..109407753-chrX:109643147..109648806,13	MCF-7	breast:
8	chrX:109556301..109564965-chrX:109638412..109651371,20	MCF-7	breast:
9	chrX:109638040..109640744-chrX:109642591..109644789,3	K562	blood:
10	chrX:109640026..109642203-chrX:109643261..109646358,4	MCF-7	breast:
11	chrX:109554691..109557036-chrX:109644173..109645907,2	MCF-7	breast:
12	chrX:109644307..109646086-chrX:109647810..109649413,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000101935	Chromatin interaction
ENSG00000243978	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs5942920	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2758583	chrX:109581771-109711481	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758884	chrX:109581771-109711481	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109639800-109645800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chrX:109640200-109651200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chrX:109640400-109645000	Weak transcription	A549	lung
4	chrX:109640600-109645400	Weak transcription	HSMMtube	muscle
5	chrX:109640600-109646000	Weak transcription	Fetal Intestine Small	intestine
6	chrX:109640800-109645600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chrX:109641000-109646400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chrX:109641200-109646200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chrX:109641400-109644800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chrX:109641400-109644800	Weak transcription	Placenta	Placenta
11	chrX:109641400-109645000	Weak transcription	Hela-S3	cervix
12	chrX:109641400-109645200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chrX:109641400-109656200	Weak transcription	Esophagus	oesophagus
14	chrX:109641600-109645600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chrX:109641600-109646000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chrX:109641800-109644800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chrX:109642000-109645000	Weak transcription	HMEC	breast
18	chrX:109642200-109645200	Weak transcription	HSMM	muscle
19	chrX:109642400-109645200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chrX:109642800-109646000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chrX:109642800-109648000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chrX:109643000-109646000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chrX:109643000-109647600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chrX:109643200-109646000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chrX:109643800-109645400	Enhancers	K562	blood
26	chrX:109644000-109644600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chrX:109644200-109645000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chrX:109644400-109644600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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