Variant report

Variant	rs5942920
Chromosome Location	chrX:109653638-109653639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:109409548..109411510-chrX:109651321..109653948,2	MCF-7	breast:
2	chrX:109405106..109407983-chrX:109651863..109654237,3	K562	blood:
3	chrX:109644001..109647691-chrX:109648578..109653644,9	MCF-7	breast:
4	chrX:109417234..109418814-chrX:109653320..109655096,2	MCF-7	breast:
5	chrX:109397479..109399469-chrX:109653469..109655817,2	MCF-7	breast:
6	chrX:109560137..109562194-chrX:109651735..109654266,2	MCF-7	breast:
7	chrX:109524077..109526589-chrX:109651737..109654452,2	K562	blood:
8	chrX:109559530..109563056-chrX:109653332..109655956,3	K562	blood:
9	chrX:109560652..109563300-chrX:109653046..109656262,3	MCF-7	breast:
10	chrX:109402318..109405826-chrX:109652790..109656171,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000101935	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16985949	1.00[MEX][hapmap]
rs16985992	1.00[GIH][hapmap]
rs5942922	1.00[GIH][hapmap]
rs5942923	0.84[YRI][hapmap]
rs6642767	1.00[MEX][hapmap]
rs7049753	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2758583	chrX:109581771-109711481	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758884	chrX:109581771-109711481	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109641400-109656200	Weak transcription	Esophagus	oesophagus
2	chrX:109646800-109653800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chrX:109646800-109656200	Weak transcription	Right Atrium	heart
4	chrX:109649000-109661800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chrX:109649400-109656200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chrX:109651200-109655800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chrX:109651600-109656200	Weak transcription	Placenta	Placenta
8	chrX:109652200-109654400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chrX:109652400-109654400	Flanking Active TSS	K562	blood
10	chrX:109652600-109653800	Enhancers	Hela-S3	cervix
11	chrX:109652600-109653800	Enhancers	NHLF	lung
12	chrX:109652600-109654000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chrX:109652600-109654000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chrX:109652600-109654200	Enhancers	NHEK	skin
15	chrX:109652600-109654400	Enhancers	NHDF-Ad	bronchial
16	chrX:109652800-109654000	Enhancers	Muscle Satellite Cultured Cells	--
17	chrX:109652800-109654000	Enhancers	HMEC	breast
18	chrX:109652800-109654000	Enhancers	NH-A	brain
19	chrX:109653000-109654000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chrX:109653000-109654200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chrX:109653200-109655800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chrX:109653200-109656800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chrX:109653400-109654600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chrX:109653600-109654000	Enhancers	A549	lung
25	chrX:109653600-109654200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chrX:109653600-109655800	Weak transcription	HSMM	muscle
27	chrX:109653600-109656200	Weak transcription	Osteobl	bone
28	chrX:109653600-109658200	Weak transcription	HSMMtube	muscle

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