Variant report

Variant	rs16985992
Chromosome Location	chrX:109664899-109664900
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12115909	1.00[MEX][hapmap]
rs12116084	1.00[MEX][hapmap]
rs12116355	1.00[MEX][hapmap]
rs16985950	1.00[MEX][hapmap]
rs16985968	1.00[MEX][hapmap]
rs5942920	1.00[GIH][hapmap]
rs5942922	1.00[GIH][hapmap]
rs7054958	1.00[MEX][hapmap]
rs7062603	1.00[MEX][hapmap]
rs7887044	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2758583	chrX:109581771-109711481	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758884	chrX:109581771-109711481	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109662000-109666200	Bivalent Enhancer	Fetal Muscle Leg	muscle
2	chrX:109662800-109671400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chrX:109663000-109665400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chrX:109663200-109665200	Enhancers	Brain Substantia Nigra	brain
5	chrX:109663400-109665000	Bivalent Enhancer	Fetal Lung	lung
6	chrX:109663400-109665600	Weak transcription	Stomach Mucosa	stomach
7	chrX:109663600-109666800	Enhancers	Liver	Liver
8	chrX:109664000-109665000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chrX:109664000-109665200	Enhancers	Brain Angular Gyrus	brain
10	chrX:109664000-109665800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
11	chrX:109664200-109665200	Enhancers	HSMMtube	muscle
12	chrX:109664400-109665200	Enhancers	Fetal Thymus	thymus
13	chrX:109664400-109665800	Enhancers	H9 Cell Line	embryonic stem cell
14	chrX:109664400-109668400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chrX:109664600-109665600	Weak transcription	Pancreas	Pancrea
16	chrX:109664600-109665800	Enhancers	HMEC	breast
17	chrX:109664800-109668600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chrX:109664800-109680600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links