Variant report

Variant	rs7054958
Chromosome Location	chrX:109760367-109760368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1679853	1.00[MEX][hapmap]
rs16985968	1.00[MEX][hapmap]
rs16985992	1.00[MEX][hapmap]
rs1738422	1.00[MEX][hapmap]
rs197033	1.00[MEX][hapmap]
rs7887044	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109754800-109763200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chrX:109760000-109760600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chrX:109760000-109760800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chrX:109760200-109760800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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