Variant report

Variant	rs1679853
Chromosome Location	chrX:109954089-109954090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1679852	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1679854	1.00[ASW][hapmap];1.00[GIH][hapmap];0.90[YRI][hapmap]
rs16986107	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs16986129	1.00[MEX][hapmap]
rs16986149	1.00[MEX][hapmap]
rs1738422	1.00[ASW][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs197024	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs197026	1.00[MEX][hapmap]
rs197033	1.00[ASW][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap]
rs197037	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs197039	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs197044	1.00[GIH][hapmap]
rs4893397	1.00[MEX][hapmap]
rs4893460	1.00[MEX][hapmap]
rs7054958	1.00[MEX][hapmap]
rs7876352	0.83[ASW][hapmap];1.00[GIH][hapmap]
rs7876744	1.00[GIH][hapmap]
rs966692	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv7037	chrX:109927893-109972675	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-109964000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links