Variant report

Variant	rs197037
Chromosome Location	chrX:109987364-109987365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1626575	0.91[YRI][hapmap]
rs1679852	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.91[YRI][hapmap]
rs1679853	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1679854	1.00[GIH][hapmap]
rs16986107	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.91[YRI][hapmap]
rs16986129	1.00[MEX][hapmap]
rs16986149	1.00[MEX][hapmap]
rs1738422	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs197024	0.92[ASW][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.91[YRI][hapmap]
rs197026	1.00[MEX][hapmap]
rs197033	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs197035	0.95[YRI][hapmap]
rs197038	0.91[YRI][hapmap]
rs197039	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap]
rs197040	0.91[YRI][hapmap]
rs197044	1.00[GIH][hapmap];0.81[LWK][hapmap]
rs2170263	0.91[YRI][hapmap]
rs4893397	0.92[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.91[YRI][hapmap]
rs4893460	0.92[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[YRI][hapmap]
rs5942686	0.91[YRI][hapmap]
rs7876352	1.00[GIH][hapmap]
rs7876744	1.00[GIH][hapmap]
rs966692	0.92[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109978600-109989000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chrX:109986200-109989000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chrX:109986400-109987600	Enhancers	NHLF	lung
5	chrX:109986400-109989800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chrX:109986400-109989800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chrX:109986600-109987600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chrX:109986600-109988600	Enhancers	Rectal Smooth Muscle	rectum
9	chrX:109986600-109989600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chrX:109986800-109987400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chrX:109986800-109987400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
12	chrX:109986800-109987600	Enhancers	Osteobl	bone
13	chrX:109986800-109987800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chrX:109986800-109989800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chrX:109987000-109987400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chrX:109987000-109987800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chrX:109987000-109988200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chrX:109987000-109989000	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chrX:109987000-109989200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chrX:109987200-109987400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chrX:109987200-109987600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chrX:109987200-109987800	Weak transcription	Fetal Brain Male	brain
23	chrX:109987200-109987800	Bivalent Enhancer	Fetal Lung	lung
24	chrX:109987200-109988200	Enhancers	Fetal Stomach	stomach
25	chrX:109987200-109988800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chrX:109987200-109988800	Enhancers	Adipose Nuclei	Adipose
27	chrX:109987200-109989000	Enhancers	NHDF-Ad	bronchial

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