Variant report

Variant	rs966692
Chromosome Location	chrX:110004310-110004311
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1626575	1.00[YRI][hapmap]
rs1679852	0.92[ASW][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs1679853	1.00[MEX][hapmap]
rs16986107	0.92[ASW][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs16986129	1.00[MEX][hapmap]
rs16986149	1.00[MEX][hapmap]
rs1738422	1.00[MEX][hapmap]
rs197024	0.85[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs197026	1.00[MEX][hapmap]
rs197033	1.00[MEX][hapmap]
rs197035	0.95[YRI][hapmap]
rs197037	0.92[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.91[YRI][hapmap]
rs197038	1.00[YRI][hapmap]
rs197039	0.92[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[YRI][hapmap]
rs197040	1.00[YRI][hapmap]
rs2170263	1.00[YRI][hapmap]
rs4893397	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs4893460	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs5942686	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109991800-110011600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chrX:110000800-110013200	Weak transcription	Fetal Brain Female	brain
4	chrX:110001800-110007600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chrX:110003200-110006800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chrX:110003400-110007600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chrX:110003800-110004400	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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