Variant report

Variant	rs197040
Chromosome Location	chrX:109982027-109982028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1626575	1.00[YRI][hapmap]
rs1679852	1.00[YRI][hapmap]
rs16986107	1.00[YRI][hapmap]
rs197024	1.00[YRI][hapmap]
rs197035	0.96[YRI][hapmap]
rs197037	0.91[YRI][hapmap]
rs197038	1.00[YRI][hapmap]
rs197039	0.95[YRI][hapmap]
rs2170263	1.00[YRI][hapmap]
rs4893397	1.00[YRI][hapmap]
rs4893460	1.00[YRI][hapmap]
rs5942686	1.00[YRI][hapmap]
rs966692	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109976600-109984000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chrX:109978600-109989000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chrX:109978800-109986200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chrX:109978800-109986600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chrX:109979000-109983600	Weak transcription	HMEC	breast
7	chrX:109979000-109984200	Weak transcription	NH-A	brain
8	chrX:109979400-109983200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chrX:109979400-109984200	Weak transcription	NHLF	lung
10	chrX:109979400-109984400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chrX:109979400-109984400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chrX:109979400-109984800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chrX:109981200-109983800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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