Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1626575	1.00[YRI][hapmap]
rs1679852	0.92[ASW][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs1679853	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1679854	1.00[GIH][hapmap]
rs16986107	0.92[ASW][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs16986129	1.00[MEX][hapmap]
rs16986149	1.00[MEX][hapmap]
rs1738422	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs197026	1.00[MEX][hapmap]
rs197033	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs197035	0.95[YRI][hapmap]
rs197037	0.92[ASW][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.91[YRI][hapmap]
rs197038	1.00[YRI][hapmap]
rs197039	0.92[ASW][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap]
rs197040	1.00[YRI][hapmap]
rs197044	1.00[GIH][hapmap]
rs2170263	1.00[YRI][hapmap]
rs4893397	0.85[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs4893460	0.85[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs5942686	1.00[YRI][hapmap]
rs7876352	1.00[GIH][hapmap]
rs7876744	1.00[GIH][hapmap]
rs966692	0.85[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv7037	chrX:109927893-109972675	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109958200-109975400	Weak transcription	Adipose Nuclei	Adipose
3	chrX:109967400-109968200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chrX:109967400-109968200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chrX:109967600-109968200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chrX:109967800-109968200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chrX:109968000-109968200	Enhancers	Brain Germinal Matrix	brain

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