Variant report

Variant	rs16986149
Chromosome Location	chrX:110002340-110002341
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1679852	1.00[MEX][hapmap]
rs1679853	1.00[MEX][hapmap]
rs16986107	1.00[MEX][hapmap]
rs16986117	1.00[YRI][hapmap]
rs16986125	1.00[YRI][hapmap]
rs16986129	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16986138	1.00[YRI][hapmap]
rs16986139	1.00[YRI][hapmap]
rs16986152	1.00[YRI][hapmap]
rs16986160	1.00[MKK][hapmap]
rs1738422	1.00[MEX][hapmap]
rs197024	1.00[MEX][hapmap]
rs197026	1.00[MEX][hapmap]
rs197033	1.00[MEX][hapmap]
rs197037	1.00[MEX][hapmap]
rs197039	1.00[MEX][hapmap]
rs4893397	1.00[MEX][hapmap]
rs4893460	1.00[MEX][hapmap]
rs966692	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109991800-110011600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chrX:109999000-110002600	Weak transcription	NH-A	brain
4	chrX:110000800-110003200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chrX:110000800-110013200	Weak transcription	Fetal Brain Female	brain
6	chrX:110001800-110002600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chrX:110001800-110003800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chrX:110001800-110007600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chrX:110002000-110002600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chrX:110002000-110003200	Enhancers	NHLF	lung
11	chrX:110002000-110003800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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