Variant report

Variant	rs16986138
Chromosome Location	chrX:109997336-109997337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16986117	1.00[YRI][hapmap]
rs16986125	1.00[YRI][hapmap]
rs16986129	1.00[YRI][hapmap]
rs16986139	1.00[YRI][hapmap]
rs16986149	1.00[YRI][hapmap]
rs16986152	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109991600-110000800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chrX:109991800-110011600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chrX:109994400-109998600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chrX:109994600-109997600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chrX:109997000-109997400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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