Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10521529	0.83[LWK][hapmap]
rs1679852	1.00[MEX][hapmap]
rs1679853	1.00[MEX][hapmap]
rs16986107	1.00[MEX][hapmap]
rs16986113	0.83[LWK][hapmap]
rs16986117	1.00[YRI][hapmap]
rs16986121	0.83[LWK][hapmap]
rs16986125	1.00[YRI][hapmap]
rs16986138	1.00[YRI][hapmap]
rs16986139	1.00[YRI][hapmap]
rs16986149	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16986152	1.00[YRI][hapmap]
rs16986160	1.00[MKK][hapmap]
rs1738422	1.00[MEX][hapmap]
rs197024	1.00[MEX][hapmap]
rs197026	1.00[MEX][hapmap]
rs197033	1.00[MEX][hapmap]
rs197037	1.00[MEX][hapmap]
rs197039	1.00[MEX][hapmap]
rs4893397	1.00[MEX][hapmap]
rs4893460	1.00[MEX][hapmap]
rs966692	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109987600-109993200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chrX:109988800-109994000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chrX:109989200-109993200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chrX:109990000-109994800	Enhancers	Adipose Nuclei	Adipose
6	chrX:109990200-109993200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chrX:109991000-109993200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chrX:109991600-110000800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chrX:109991800-110011600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chrX:109992200-109993200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chrX:109993000-109993200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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