Variant report

Variant	rs197039
Chromosome Location	chrX:109984425-109984426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1626575	0.95[YRI][hapmap]
rs1679852	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[YRI][hapmap]
rs1679853	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1679854	1.00[GIH][hapmap]
rs16986107	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[YRI][hapmap]
rs16986129	1.00[MEX][hapmap]
rs16986149	1.00[MEX][hapmap]
rs1738422	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs197024	0.92[ASW][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap]
rs197026	1.00[MEX][hapmap]
rs197033	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs197035	1.00[YRI][hapmap]
rs197037	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap]
rs197038	0.95[YRI][hapmap]
rs197040	0.95[YRI][hapmap]
rs197044	1.00[GIH][hapmap];0.81[LWK][hapmap]
rs2170263	0.95[YRI][hapmap]
rs4893397	0.92[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[YRI][hapmap]
rs4893460	0.92[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap]
rs5942686	0.95[YRI][hapmap]
rs7876352	1.00[GIH][hapmap]
rs7876744	1.00[GIH][hapmap]
rs966692	0.92[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109978600-109989000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chrX:109978800-109986200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chrX:109978800-109986600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chrX:109979400-109984800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chrX:109983000-109985400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chrX:109983600-109985200	Enhancers	HMEC	breast
8	chrX:109983800-109985200	Enhancers	NHDF-Ad	bronchial
9	chrX:109983800-109985800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chrX:109984000-109985000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chrX:109984200-109984600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chrX:109984200-109985000	Enhancers	Osteobl	bone
13	chrX:109984200-109985200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chrX:109984200-109985200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chrX:109984200-109985200	Enhancers	NH-A	brain
16	chrX:109984200-109985200	Enhancers	NHLF	lung
17	chrX:109984400-109985000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chrX:109984400-109985000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chrX:109984400-109985200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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