Variant report

Variant	rs197035
Chromosome Location	chrX:109988963-109988964
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1626575	0.96[YRI][hapmap]
rs1679852	0.95[YRI][hapmap]
rs16986107	0.95[YRI][hapmap]
rs197024	0.95[YRI][hapmap]
rs197037	0.95[YRI][hapmap]
rs197038	0.96[YRI][hapmap]
rs197039	1.00[YRI][hapmap]
rs197040	0.96[YRI][hapmap]
rs2170263	0.96[YRI][hapmap]
rs4893397	0.95[YRI][hapmap]
rs4893460	0.95[YRI][hapmap]
rs5942686	0.96[YRI][hapmap]
rs966692	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109978600-109989000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chrX:109986200-109989000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chrX:109986400-109989800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chrX:109986400-109989800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chrX:109986600-109989600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chrX:109986800-109989800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chrX:109987000-109989000	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chrX:109987000-109989200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chrX:109987200-109989000	Enhancers	NHDF-Ad	bronchial
11	chrX:109987400-109989000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chrX:109987600-109989000	Enhancers	Colon Smooth Muscle	Colon
13	chrX:109987600-109993200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chrX:109987800-109989600	Enhancers	Fetal Brain Male	brain
15	chrX:109987800-109991600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chrX:109988600-109989000	Bivalent Enhancer	Fetal Stomach	stomach
17	chrX:109988800-109989400	Weak transcription	NHLF	lung
18	chrX:109988800-109990000	Bivalent Enhancer	Adipose Nuclei	Adipose
19	chrX:109988800-109994000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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