Variant report

Variant	rs2170263
Chromosome Location	chrX:110027910-110027911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1626575	1.00[YRI][hapmap]
rs1679852	1.00[YRI][hapmap]
rs16986107	1.00[YRI][hapmap]
rs197024	1.00[YRI][hapmap]
rs197035	0.96[YRI][hapmap]
rs197037	0.91[YRI][hapmap]
rs197038	1.00[YRI][hapmap]
rs197039	0.95[YRI][hapmap]
rs197040	1.00[YRI][hapmap]
rs4893397	1.00[YRI][hapmap]
rs4893460	1.00[YRI][hapmap]
rs5942686	1.00[YRI][hapmap]
rs966692	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:110016400-110037800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chrX:110027200-110036600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chrX:110027800-110028000	Enhancers	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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