Variant report

Variant	rs197044
Chromosome Location	chrX:109978360-109978361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1679841	0.84[ASW][hapmap];0.88[YRI][hapmap]
rs1679852	1.00[GIH][hapmap]
rs1679853	1.00[GIH][hapmap]
rs1679854	1.00[GIH][hapmap]
rs16986107	1.00[GIH][hapmap]
rs1738422	1.00[GIH][hapmap]
rs1738427	0.89[YRI][hapmap]
rs197024	1.00[GIH][hapmap]
rs197027	0.84[ASW][hapmap];0.95[YRI][hapmap]
rs197028	0.89[YRI][hapmap]
rs197033	1.00[GIH][hapmap]
rs197037	1.00[GIH][hapmap];0.81[LWK][hapmap]
rs197039	1.00[GIH][hapmap];0.81[LWK][hapmap]
rs197045	0.95[YRI][hapmap]
rs197046	0.95[YRI][hapmap]
rs197048	0.89[YRI][hapmap]
rs7876352	1.00[GIH][hapmap]
rs7876744	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109975600-109979400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chrX:109975600-109979800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chrX:109975600-109980400	Enhancers	NHDF-Ad	bronchial
5	chrX:109976200-109979000	Enhancers	HMEC	breast
6	chrX:109976600-109978600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chrX:109976600-109978600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chrX:109976600-109979000	Enhancers	NH-A	brain
9	chrX:109976600-109984000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chrX:109977200-109979000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chrX:109977400-109978800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chrX:109977400-109979000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chrX:109977400-109979400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chrX:109977600-109978400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chrX:109977600-109978400	Weak transcription	NHLF	lung
16	chrX:109977600-109978800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chrX:109977600-109979000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chrX:109977600-109979000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chrX:109977600-109979400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chrX:109977600-109979400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chrX:109977800-109978800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chrX:109978000-109978600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chrX:109978000-109979400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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