Variant report

Variant	rs197048
Chromosome Location	chrX:109975301-109975302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1679841	1.00[YRI][hapmap]
rs1738427	1.00[YRI][hapmap]
rs197027	0.95[YRI][hapmap]
rs197028	1.00[YRI][hapmap]
rs197044	0.89[YRI][hapmap]
rs197045	0.95[YRI][hapmap]
rs197046	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109958200-109975400	Weak transcription	Adipose Nuclei	Adipose
3	chrX:109973400-109976400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chrX:109974600-109976400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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