Variant report

Variant	rs1679841
Chromosome Location	chrX:109966860-109966861
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1738427	1.00[YRI][hapmap]
rs197027	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap]
rs197028	1.00[YRI][hapmap]
rs197044	0.84[ASW][hapmap];0.88[YRI][hapmap]
rs197045	0.94[YRI][hapmap]
rs197046	0.94[YRI][hapmap]
rs197048	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv7037	chrX:109927893-109972675	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109955400-109968000	Weak transcription	Brain Germinal Matrix	brain
3	chrX:109958200-109975400	Weak transcription	Adipose Nuclei	Adipose
4	chrX:109966600-109968000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links