Variant report

Variant	rs197026
Chromosome Location	chrX:109960527-109960528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1679852	1.00[MEX][hapmap]
rs1679853	1.00[MEX][hapmap]
rs16986107	1.00[MEX][hapmap]
rs16986129	1.00[MEX][hapmap]
rs16986149	1.00[MEX][hapmap]
rs1738422	1.00[MEX][hapmap]
rs197024	1.00[MEX][hapmap]
rs197033	1.00[MEX][hapmap]
rs197037	1.00[MEX][hapmap]
rs197039	1.00[MEX][hapmap]
rs197051	0.91[YRI][hapmap]
rs2062000	0.91[YRI][hapmap]
rs4893397	1.00[MEX][hapmap]
rs4893460	1.00[MEX][hapmap]
rs966692	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv7037	chrX:109927893-109972675	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-109964000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
3	chrX:109955400-109968000	Weak transcription	Brain Germinal Matrix	brain
4	chrX:109956600-109964200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chrX:109958000-109962200	Weak transcription	Brain Anterior Caudate	brain
6	chrX:109958200-109975400	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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