Variant report

Variant	rs16986121
Chromosome Location	chrX:109985664-109985665
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10521529	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16986105	0.86[YRI][hapmap]
rs16986113	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16986118	1.00[YRI][hapmap]
rs16986129	0.83[LWK][hapmap]
rs16986132	0.84[YRI][hapmap]
rs16986160	1.00[YRI][hapmap]
rs1842504	1.00[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109978600-109989000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chrX:109978800-109986200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chrX:109978800-109986600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chrX:109983800-109985800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chrX:109984600-109987200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chrX:109984800-109986800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chrX:109985000-109986600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chrX:109985000-109986800	Weak transcription	Osteobl	bone
10	chrX:109985000-109987000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chrX:109985000-109987000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chrX:109985200-109986200	Weak transcription	NHDF-Ad	bronchial
13	chrX:109985200-109986400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chrX:109985200-109986400	Weak transcription	NHLF	lung
15	chrX:109985200-109986800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chrX:109985200-109986800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chrX:109985400-109986400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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