Variant report

Variant	rs1842504
Chromosome Location	chrX:109994233-109994234
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10521529	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16986105	0.86[YRI][hapmap]
rs16986113	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16986118	1.00[YRI][hapmap]
rs16986121	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16986132	0.84[YRI][hapmap]
rs16986160	1.00[ASW][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109990000-109994800	Enhancers	Adipose Nuclei	Adipose
3	chrX:109991600-110000800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chrX:109991800-110011600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chrX:109993400-109994600	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chrX:109994000-109994400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chrX:109994000-109994400	Enhancers	Pancreas	Pancrea
8	chrX:109994000-109994600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chrX:109994200-109994800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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