Variant report

Variant	rs16986132
Chromosome Location	chrX:109993459-109993460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10521529	0.84[YRI][hapmap]
rs16986113	0.84[YRI][hapmap]
rs16986118	0.85[YRI][hapmap]
rs16986121	0.84[YRI][hapmap]
rs16986160	0.84[YRI][hapmap]
rs1842504	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109988800-109994000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chrX:109990000-109994800	Enhancers	Adipose Nuclei	Adipose
4	chrX:109991600-110000800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chrX:109991800-110011600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chrX:109993200-109993600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chrX:109993200-109993600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chrX:109993200-109994000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chrX:109993200-109994200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chrX:109993200-109994200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chrX:109993200-109994200	Bivalent Enhancer	Fetal Brain Female	brain
12	chrX:109993200-109994200	Enhancers	NHDF-Ad	bronchial
13	chrX:109993400-109993600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chrX:109993400-109993800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chrX:109993400-109994000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chrX:109993400-109994200	Bivalent Enhancer	Fetal Lung	lung
17	chrX:109993400-109994600	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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