Variant report

Variant	rs7887044
Chromosome Location	chrX:109655203-109655204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:109644723..109647738-chrX:109654960..109657008,3	K562	blood:
2	chrX:109419131..109420847-chrX:109655049..109657917,2	MCF-7	breast:
3	chrX:109397479..109399469-chrX:109653469..109655817,2	MCF-7	breast:
4	chrX:109560700..109563056-chrX:109654170..109656724,2	K562	blood:
5	chrX:109494874..109497865-chrX:109653674..109656116,2	K562	blood:
6	chrX:109559530..109563056-chrX:109653332..109655956,3	K562	blood:
7	chrX:109560652..109563300-chrX:109653046..109656262,3	MCF-7	breast:
8	chrX:109402318..109405826-chrX:109652790..109656171,5	MCF-7	breast:
9	chrX:109653798..109657202-chrX:109657375..109660631,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000101935	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12115909	1.00[MEX][hapmap]
rs12116084	1.00[MEX][hapmap]
rs12116355	1.00[MEX][hapmap]
rs16985950	1.00[MEX][hapmap]
rs16985968	1.00[MEX][hapmap]
rs16985992	1.00[MEX][hapmap]
rs6642767	0.82[YRI][hapmap]
rs7054756	0.82[YRI][hapmap]
rs7054958	1.00[MEX][hapmap]
rs7062603	1.00[MEX][hapmap]
rs760953	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2758583	chrX:109581771-109711481	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758884	chrX:109581771-109711481	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109641400-109656200	Weak transcription	Esophagus	oesophagus
2	chrX:109646800-109656200	Weak transcription	Right Atrium	heart
3	chrX:109649000-109661800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chrX:109649400-109656200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chrX:109651200-109655800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chrX:109651600-109656200	Weak transcription	Placenta	Placenta
7	chrX:109653200-109655800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chrX:109653200-109656800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chrX:109653600-109655800	Weak transcription	HSMM	muscle
10	chrX:109653600-109656200	Weak transcription	Osteobl	bone
11	chrX:109653600-109658200	Weak transcription	HSMMtube	muscle
12	chrX:109653800-109662200	Weak transcription	Hela-S3	cervix
13	chrX:109654000-109656000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chrX:109654000-109656000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chrX:109654000-109656000	Weak transcription	A549	lung
16	chrX:109654000-109656200	Weak transcription	NH-A	brain
17	chrX:109654000-109659000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chrX:109654200-109655800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chrX:109654200-109655800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chrX:109654200-109657400	Weak transcription	NHEK	skin
21	chrX:109654400-109655600	Weak transcription	NHDF-Ad	bronchial
22	chrX:109654400-109656000	Enhancers	K562	blood
23	chrX:109654400-109661400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chrX:109654600-109656200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chrX:109654600-109660400	Weak transcription	Brain Anterior Caudate	brain
26	chrX:109654600-109662000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chrX:109655200-109655400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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