Variant report

Variant	rs7057392
Chromosome Location	chrX:109202451-109202452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7059500	0.89[ASW][hapmap];1.00[MEX][hapmap]
rs955874	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531154	chrX:108934095-109332109	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	130 gene(s)	inside rSNPs	diseases
2	esv3369563	chrX:109079631-109573656	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109199800-109203800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chrX:109201600-109203600	Active TSS	Primary neutrophils fromperipheralblood	blood
3	chrX:109201800-109202600	Weak transcription	GM12878-XiMat	blood
4	chrX:109201800-109203800	Enhancers	Primary hematopoietic stem cells	blood
5	chrX:109202000-109203200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chrX:109202200-109202600	Flanking Active TSS	K562	blood
7	chrX:109202200-109202800	Weak transcription	Fetal Thymus	thymus
8	chrX:109202200-109205400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chrX:109202400-109202600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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