Variant report

No.	Distal block	Cell Line	Cell type
1	chrX:109192203..109199912-chrX:109243451..109250232,26	MCF-7	breast:
2	chrX:109195096..109198183-chrX:109240354..109242891,3	MCF-7	breast:
3	chrX:109194429..109197002-chrX:109325433..109327043,2	MCF-7	breast:
4	chrX:109193982..109197192-chrX:109244601..109247206,3	MCF-7	breast:
5	chrX:109195431..109198023-chrX:109247637..109250628,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157600	Chromatin interaction

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7057392	0.89[ASW][hapmap];1.00[MEX][hapmap]
rs955874	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531154	chrX:108934095-109332109	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	130 gene(s)	inside rSNPs	diseases
2	esv3369563	chrX:109079631-109573656	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109195000-109197000	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chrX:109195000-109197000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chrX:109195200-109196800	Enhancers	Fetal Heart	heart
4	chrX:109195200-109196800	Enhancers	Left Ventricle	heart
5	chrX:109195400-109197600	Enhancers	Fetal Thymus	thymus
6	chrX:109195400-109197600	Enhancers	Thymus	Thymus
7	chrX:109195400-109198400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chrX:109195400-109198600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chrX:109195400-109198600	Enhancers	K562	blood
10	chrX:109195400-109198600	Enhancers	NHEK	skin
11	chrX:109195600-109197000	Enhancers	HSMMtube	muscle
12	chrX:109195800-109196800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chrX:109196000-109197000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chrX:109196000-109197200	Weak transcription	HMEC	breast
15	chrX:109196000-109197400	Weak transcription	Placenta	Placenta
16	chrX:109196000-109198800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chrX:109196400-109197000	Enhancers	HUVEC	blood vessel
18	chrX:109196400-109197200	Enhancers	Primary hematopoietic stem cells	blood
19	chrX:109196400-109197400	Enhancers	GM12878-XiMat	blood
20	chrX:109196600-109197600	Enhancers	H9 Cell Line	embryonic stem cell
21	chrX:109196600-109197800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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