Variant report

Variant	rs7068083
Chromosome Location	chr10:49507153-49507154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49505437..49509227-chr10:49512303..49516954,6	K562	blood:
2	chr10:49506153..49508451-chr10:49513905..49515669,2	MCF-7	breast:
3	chr10:49504955..49507590-chr10:49509692..49512990,3	MCF-7	breast:
4	chr10:49506365..49508904-chr10:49509611..49511777,2	K562	blood:
5	chr10:49442419..49445275-chr10:49506224..49508061,2	K562	blood:
6	chr10:49505338..49509227-chr10:49512971..49515977,6	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs166815	1.00[AMR][1000 genomes]
rs1730444	1.00[AMR][1000 genomes]
rs1730445	1.00[AMR][1000 genomes]
rs1730446	1.00[AMR][1000 genomes]
rs2455321	1.00[AMR][1000 genomes]
rs2463958	1.00[AMR][1000 genomes]
rs2652408	1.00[AMR][1000 genomes]
rs2698763	1.00[AMR][1000 genomes]
rs2698764	1.00[AMR][1000 genomes]
rs280605	1.00[AMR][1000 genomes]
rs280606	1.00[AMR][1000 genomes]
rs280607	1.00[AMR][1000 genomes]
rs280608	1.00[AMR][1000 genomes]
rs280615	1.00[AMR][1000 genomes]
rs280617	1.00[AMR][1000 genomes]
rs413065	1.00[AMR][1000 genomes]
rs432971	1.00[AMR][1000 genomes]
rs440894	1.00[AMR][1000 genomes]
rs477761	1.00[AMR][1000 genomes]
rs57211602	1.00[AMR][1000 genomes]
rs572211	1.00[AMR][1000 genomes]
rs57415323	1.00[AMR][1000 genomes]
rs59368050	0.83[AMR][1000 genomes]
rs60503953	0.83[AMR][1000 genomes]
rs7068262	1.00[AMR][1000 genomes]
rs7069773	0.83[AMR][1000 genomes]
rs7073154	1.00[AMR][1000 genomes]
rs73296347	1.00[AMR][1000 genomes]
rs73296348	1.00[AMR][1000 genomes]
rs73296379	1.00[AMR][1000 genomes]
rs73296381	1.00[AMR][1000 genomes]
rs73296382	1.00[AMR][1000 genomes]
rs73296386	0.83[AMR][1000 genomes]
rs73296387	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv550812	chr10:49484698-49524715	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49496400-49514200	Weak transcription	Right Atrium	heart

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