Variant report

Variant	rs59368050
Chromosome Location	chr10:49473801-49473802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs166815	0.83[AMR][1000 genomes]
rs17010591	1.00[EUR][1000 genomes]
rs17010621	1.00[EUR][1000 genomes]
rs17010878	1.00[EUR][1000 genomes]
rs17010962	1.00[EUR][1000 genomes]
rs17010990	1.00[EUR][1000 genomes]
rs1730444	0.83[AMR][1000 genomes]
rs1730445	0.83[AMR][1000 genomes]
rs1730446	0.83[AMR][1000 genomes]
rs2455321	0.83[AMR][1000 genomes]
rs2463958	0.83[AMR][1000 genomes]
rs2652408	0.83[AMR][1000 genomes]
rs2698763	0.83[AMR][1000 genomes]
rs2698764	0.83[AMR][1000 genomes]
rs280605	0.83[AMR][1000 genomes]
rs280606	0.83[AMR][1000 genomes]
rs280607	0.83[AMR][1000 genomes]
rs280608	0.83[AMR][1000 genomes]
rs280615	0.83[AMR][1000 genomes]
rs280617	0.83[AMR][1000 genomes]
rs413065	0.83[AMR][1000 genomes]
rs432971	0.83[AMR][1000 genomes]
rs440894	0.83[AMR][1000 genomes]
rs477761	0.83[AMR][1000 genomes]
rs57211602	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs572211	0.83[AMR][1000 genomes]
rs57415323	0.83[AMR][1000 genomes]
rs60503953	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7068083	0.83[AMR][1000 genomes]
rs7068262	0.83[AMR][1000 genomes]
rs7073154	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73296347	0.83[AMR][1000 genomes]
rs73296348	0.83[AMR][1000 genomes]
rs73296379	0.83[AMR][1000 genomes]
rs73296381	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73296382	0.83[AMR][1000 genomes]
rs73296386	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73296387	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv895367	chr10:49333754-49491047	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv895370	chr10:49421173-49484698	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49466600-49474800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:49466800-49492400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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