Variant report

Variant	rs7068513
Chromosome Location	chr10:45076223-45076224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs7083225	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7095527	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7907120	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7908851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7909675	0.88[AFR][1000 genomes]
rs7920421	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1042549	chr10:45071890-45117466	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45072200-45081600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:45072800-45076400	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:45072800-45076600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:45072800-45077200	Weak transcription	HSMMtube	muscle
5	chr10:45073000-45077400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:45074000-45077000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:45074000-45077200	Weak transcription	NHDF-Ad	bronchial
8	chr10:45074200-45076800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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