Variant report

Variant	rs7083225
Chromosome Location	chr10:45054513-45054514
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45053214..45055772-chr10:45057655..45059779,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11239040	1.00[EUR][1000 genomes]
rs1147942	1.00[EUR][1000 genomes]
rs1147945	1.00[EUR][1000 genomes]
rs1147946	1.00[EUR][1000 genomes]
rs1147947	1.00[EUR][1000 genomes]
rs1147951	1.00[EUR][1000 genomes]
rs1147953	1.00[EUR][1000 genomes]
rs1147955	1.00[EUR][1000 genomes]
rs1147959	1.00[EUR][1000 genomes]
rs1147964	1.00[EUR][1000 genomes]
rs1253715	1.00[EUR][1000 genomes]
rs1253717	1.00[EUR][1000 genomes]
rs1334314	1.00[EUR][1000 genomes]
rs1413515	1.00[EUR][1000 genomes]
rs1413516	1.00[EUR][1000 genomes]
rs1572206	1.00[EUR][1000 genomes]
rs1889922	1.00[EUR][1000 genomes]
rs56908169	1.00[EUR][1000 genomes]
rs58512899	1.00[EUR][1000 genomes]
rs58837754	1.00[EUR][1000 genomes]
rs60579789	1.00[EUR][1000 genomes]
rs61215910	1.00[EUR][1000 genomes]
rs6593414	1.00[EUR][1000 genomes]
rs7068513	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069446	1.00[EUR][1000 genomes]
rs7069784	1.00[EUR][1000 genomes]
rs7075428	1.00[EUR][1000 genomes]
rs7075562	1.00[EUR][1000 genomes]
rs7075568	1.00[EUR][1000 genomes]
rs7090818	1.00[EUR][1000 genomes]
rs7094628	1.00[EUR][1000 genomes]
rs7095527	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7895274	1.00[EUR][1000 genomes]
rs7898252	1.00[EUR][1000 genomes]
rs7907120	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7908851	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7909675	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7920421	1.00[AMR][1000 genomes]
rs883915	1.00[EUR][1000 genomes]
rs928566	1.00[EUR][1000 genomes]
rs9663451	1.00[EUR][1000 genomes]
rs981539	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45044600-45070200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:45053600-45054600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:45053600-45054800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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