Variant report

Variant	rs56908169
Chromosome Location	chr10:44954060-44954061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM72-3	chr10:44953963-44954247	NONHSAT013036

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11239040	1.00[EUR][1000 genomes]
rs1147942	1.00[EUR][1000 genomes]
rs1147945	1.00[EUR][1000 genomes]
rs1147946	1.00[EUR][1000 genomes]
rs1147947	1.00[EUR][1000 genomes]
rs1147951	1.00[EUR][1000 genomes]
rs1147953	1.00[EUR][1000 genomes]
rs1147955	1.00[EUR][1000 genomes]
rs1147959	1.00[EUR][1000 genomes]
rs1147964	1.00[EUR][1000 genomes]
rs12244007	1.00[EUR][1000 genomes]
rs1253715	1.00[EUR][1000 genomes]
rs1253717	1.00[EUR][1000 genomes]
rs1334314	1.00[EUR][1000 genomes]
rs1413515	1.00[EUR][1000 genomes]
rs1413516	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1572206	1.00[EUR][1000 genomes]
rs17156124	1.00[EUR][1000 genomes]
rs1889922	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs197454	1.00[EUR][1000 genomes]
rs491494	1.00[EUR][1000 genomes]
rs58512899	1.00[EUR][1000 genomes]
rs58837754	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60579789	1.00[EUR][1000 genomes]
rs61215910	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs639840	1.00[EUR][1000 genomes]
rs6593414	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7069446	1.00[EUR][1000 genomes]
rs7069784	1.00[EUR][1000 genomes]
rs7075428	1.00[EUR][1000 genomes]
rs7075562	1.00[EUR][1000 genomes]
rs7075568	1.00[EUR][1000 genomes]
rs7083225	1.00[EUR][1000 genomes]
rs7090818	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7094628	1.00[EUR][1000 genomes]
rs7095527	1.00[EUR][1000 genomes]
rs7895274	1.00[EUR][1000 genomes]
rs7898252	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7909675	1.00[EUR][1000 genomes]
rs883915	1.00[EUR][1000 genomes]
rs928566	1.00[EUR][1000 genomes]
rs9663451	1.00[EUR][1000 genomes]
rs981539	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44950000-44956400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44953800-44956200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:44954000-44954800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:44954000-44954800	Enhancers	Pancreas	Pancrea
5	chr10:44954000-44955800	Enhancers	Spleen	Spleen
6	chr10:44954000-44956400	Enhancers	Ovary	ovary
7	chr10:44954000-44958800	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links