Variant report

Variant	rs1572206
Chromosome Location	chr10:44965793-44965794
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44957944..44962326-chr10:44962653..44967528,5	K562	blood:
2	chr10:44965493..44968784-chr10:44970633..44973291,3	K562	blood:
3	chr10:44959846..44962752-chr10:44965575..44968477,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11239040	1.00[EUR][1000 genomes]
rs1147942	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1147945	1.00[EUR][1000 genomes]
rs1147946	1.00[EUR][1000 genomes]
rs1147947	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1147951	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1147953	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1147955	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1147959	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1147964	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12244007	1.00[EUR][1000 genomes]
rs1253715	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1253717	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1334314	1.00[EUR][1000 genomes]
rs1413515	1.00[EUR][1000 genomes]
rs1413516	1.00[EUR][1000 genomes]
rs17156124	1.00[EUR][1000 genomes]
rs1889922	1.00[EUR][1000 genomes]
rs197454	1.00[EUR][1000 genomes]
rs491494	1.00[EUR][1000 genomes]
rs56908169	1.00[EUR][1000 genomes]
rs58512899	1.00[EUR][1000 genomes]
rs58837754	1.00[EUR][1000 genomes]
rs60579789	1.00[EUR][1000 genomes]
rs61215910	1.00[EUR][1000 genomes]
rs639840	1.00[EUR][1000 genomes]
rs6593414	1.00[EUR][1000 genomes]
rs7069446	1.00[EUR][1000 genomes]
rs7069784	1.00[EUR][1000 genomes]
rs7075428	1.00[EUR][1000 genomes]
rs7075562	1.00[EUR][1000 genomes]
rs7075568	1.00[EUR][1000 genomes]
rs7083225	1.00[EUR][1000 genomes]
rs7090818	1.00[EUR][1000 genomes]
rs7094628	1.00[EUR][1000 genomes]
rs7095527	1.00[EUR][1000 genomes]
rs7895274	1.00[EUR][1000 genomes]
rs7898252	1.00[EUR][1000 genomes]
rs7909675	1.00[EUR][1000 genomes]
rs883915	1.00[EUR][1000 genomes]
rs928566	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9663451	1.00[EUR][1000 genomes]
rs981539	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44955800-44968400	Weak transcription	Psoas Muscle	Psoas
2	chr10:44955800-44971800	Weak transcription	Right Atrium	heart
3	chr10:44956600-44970400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44960000-44966200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:44965200-44966000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:44965200-44966200	Enhancers	Fetal Muscle Trunk	muscle
7	chr10:44965200-44967400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:44965400-44967200	Enhancers	Fetal Muscle Leg	muscle
9	chr10:44965400-44967200	Enhancers	Osteobl	bone
10	chr10:44965600-44967200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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