Variant report

Variant	rs58512899
Chromosome Location	chr10:44910498-44910499
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CXCL12-5	chr10:44910097-44910601	NONHSAT013034

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11239040	1.00[EUR][1000 genomes]
rs1147942	1.00[EUR][1000 genomes]
rs1147945	1.00[EUR][1000 genomes]
rs1147946	1.00[EUR][1000 genomes]
rs1147947	1.00[EUR][1000 genomes]
rs1147951	1.00[EUR][1000 genomes]
rs1147953	1.00[EUR][1000 genomes]
rs1147955	1.00[EUR][1000 genomes]
rs1147959	1.00[EUR][1000 genomes]
rs1147964	1.00[EUR][1000 genomes]
rs12244007	1.00[EUR][1000 genomes]
rs1253715	1.00[EUR][1000 genomes]
rs1253717	1.00[EUR][1000 genomes]
rs1334314	1.00[EUR][1000 genomes]
rs1413515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1413516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1572206	1.00[EUR][1000 genomes]
rs17156124	1.00[EUR][1000 genomes]
rs1889922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs197454	1.00[EUR][1000 genomes]
rs491494	1.00[EUR][1000 genomes]
rs56908169	1.00[EUR][1000 genomes]
rs58837754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60579789	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61215910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs639840	1.00[EUR][1000 genomes]
rs6593414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7069446	1.00[EUR][1000 genomes]
rs7069784	1.00[EUR][1000 genomes]
rs7075428	1.00[EUR][1000 genomes]
rs7075562	1.00[EUR][1000 genomes]
rs7075568	1.00[EUR][1000 genomes]
rs7083225	1.00[EUR][1000 genomes]
rs7090818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7094628	1.00[EUR][1000 genomes]
rs7095527	1.00[EUR][1000 genomes]
rs7895274	1.00[EUR][1000 genomes]
rs7898252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7909675	1.00[EUR][1000 genomes]
rs883915	1.00[EUR][1000 genomes]
rs928566	1.00[EUR][1000 genomes]
rs9663451	1.00[EUR][1000 genomes]
rs981539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947900	chr10:44908354-44911811	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
2	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44906000-44911400	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:44907000-44918400	Weak transcription	Right Atrium	heart
3	chr10:44910400-44910600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links