Variant report

Variant	rs7068942
Chromosome Location	chr10:21983507-21983508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10047405	1.00[EUR][1000 genomes]
rs10218956	1.00[EUR][1000 genomes]
rs11012731	1.00[EUR][1000 genomes]
rs11012742	1.00[EUR][1000 genomes]
rs12245121	1.00[EUR][1000 genomes]
rs12249032	1.00[EUR][1000 genomes]
rs12250810	1.00[EUR][1000 genomes]
rs12251847	1.00[EUR][1000 genomes]
rs12260551	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12266450	1.00[EUR][1000 genomes]
rs2183270	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59876709	1.00[EUR][1000 genomes]
rs7083214	1.00[EUR][1000 genomes]
rs7904218	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7911585	1.00[EUR][1000 genomes]
rs9971055	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21915200-21983800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:21928600-21988200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:21929800-21988000	Weak transcription	HUVEC	blood vessel
4	chr10:21938600-21993800	Weak transcription	Lung	lung
5	chr10:21942400-21987200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:21942600-22004000	Weak transcription	NH-A	brain
7	chr10:21942800-21988400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr10:21943800-22002000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:21951200-21989000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:21951800-21989200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:21952000-21984800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:21952000-21988000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:21952600-21983600	Weak transcription	Psoas Muscle	Psoas
14	chr10:21955000-21983800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:21955000-21988000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:21956800-21988000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:21959600-21984600	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:21960400-21983800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:21961400-21993800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:21962600-21986600	Weak transcription	Fetal Kidney	kidney
21	chr10:21962800-21984000	Weak transcription	Thymus	Thymus
22	chr10:21962800-21986800	Weak transcription	Fetal Lung	lung
23	chr10:21962800-21988200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:21963000-21983600	Weak transcription	Aorta	Aorta
25	chr10:21963000-21986800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:21963000-21988000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:21963000-21988200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:21963000-21993600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:21967400-21983800	Weak transcription	Left Ventricle	heart
30	chr10:21968200-21983600	Weak transcription	Brain Angular Gyrus	brain
31	chr10:21969000-21984600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:21969000-21987600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:21970400-21984600	Weak transcription	HMEC	breast
34	chr10:21970400-21988400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:21970400-21988600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:21971000-21983800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr10:21973400-21987000	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:21975400-21984400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr10:21975800-21986600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:21976000-21983800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:21976000-21984000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:21976600-21986000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:21976800-21983800	Weak transcription	Small Intestine	intestine
44	chr10:21976800-21984200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr10:21976800-21987000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr10:21976800-21988400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr10:21976800-21988400	Weak transcription	A549	lung
48	chr10:21976800-21989200	Weak transcription	NHDF-Ad	bronchial
49	chr10:21976800-22013000	Weak transcription	HSMMtube	muscle
50	chr10:21977000-22002200	Weak transcription	Osteobl	bone

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