Variant report

Variant	rs7904218
Chromosome Location	chr10:21995899-21995900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21995574..21997205-chr10:22520645..22522648,2	K562	blood:
2	chr10:21814123..21816913-chr10:21995893..21998162,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10047405	1.00[EUR][1000 genomes]
rs10218956	1.00[EUR][1000 genomes]
rs11012731	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11012742	1.00[EUR][1000 genomes]
rs11012789	1.00[AMR][1000 genomes]
rs12243997	1.00[AMR][1000 genomes]
rs12245121	0.86[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12249032	0.84[ASW][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12250810	1.00[EUR][1000 genomes]
rs12251847	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12260551	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266219	1.00[AMR][1000 genomes]
rs12266450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2183270	0.86[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59876709	1.00[EUR][1000 genomes]
rs7068942	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7083214	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7911585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9971055	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21942600-22004000	Weak transcription	NH-A	brain
2	chr10:21943800-22002000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:21976800-22013000	Weak transcription	HSMMtube	muscle
4	chr10:21977000-22002200	Weak transcription	Osteobl	bone
5	chr10:21982200-22001600	Weak transcription	Placenta	Placenta
6	chr10:21983800-22002000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:21984000-22012400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:21984400-22002800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:21984800-22022600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:21987400-22004000	Weak transcription	Fetal Kidney	kidney
11	chr10:21987600-21996600	Weak transcription	HSMM	muscle
12	chr10:21987800-21999000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:21988400-21999200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:21989400-22013000	Weak transcription	Fetal Brain Male	brain
15	chr10:21989600-21999200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:21989600-22002600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:21989800-22002000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:21989800-22002200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:21989800-22002600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:21989800-22002600	Weak transcription	NHDF-Ad	bronchial
21	chr10:21990000-21999800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:21990200-21997200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:21990200-22004800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:21990200-22012800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:21990400-22001400	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:21990800-21997000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:21991000-21996400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:21991000-22003400	Weak transcription	Fetal Brain Female	brain
29	chr10:21992000-22002800	Weak transcription	Brain Anterior Caudate	brain
30	chr10:21992200-21996200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:21992200-22002600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:21992200-22004400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:21992200-22005000	Strong transcription	HepG2	liver
34	chr10:21992600-21997800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr10:21992600-21998600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:21992600-22001600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:21992600-22002800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr10:21992600-22013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:21992800-21997000	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:21992800-21997600	Weak transcription	GM12878-XiMat	blood
41	chr10:21992800-22003400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:21993000-22001600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:21993200-21996400	Weak transcription	Primary T cells from cord blood	blood
44	chr10:21993200-22001400	Weak transcription	Fetal Thymus	thymus
45	chr10:21993600-21996400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:21993600-22002800	Weak transcription	Colon Smooth Muscle	Colon
47	chr10:21993800-21996400	Strong transcription	Dnd41	blood
48	chr10:21993800-21999000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr10:21993800-22002800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr10:21994000-21998000	Strong transcription	Primary B cells from cord blood	blood

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