Variant report

Variant	rs7070873
Chromosome Location	chr10:23184071-23184072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11013241	1.00[EUR][1000 genomes]
rs11013243	1.00[EUR][1000 genomes]
rs12244692	1.00[EUR][1000 genomes]
rs12246812	1.00[EUR][1000 genomes]
rs12263261	1.00[EUR][1000 genomes]
rs12264254	1.00[EUR][1000 genomes]
rs12264628	1.00[EUR][1000 genomes]
rs12269406	1.00[EUR][1000 genomes]
rs12414753	1.00[EUR][1000 genomes]
rs12415049	1.00[EUR][1000 genomes]
rs28787441	1.00[EUR][1000 genomes]
rs35010365	1.00[EUR][1000 genomes]
rs61416838	1.00[EUR][1000 genomes]
rs7358042	1.00[EUR][1000 genomes]
rs74124511	1.00[EUR][1000 genomes]
rs74124519	1.00[EUR][1000 genomes]
rs74124521	1.00[EUR][1000 genomes]
rs74124522	1.00[EUR][1000 genomes]
rs74124523	1.00[EUR][1000 genomes]
rs9943348	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23181600-23185000	Weak transcription	Gastric	stomach
2	chr10:23182200-23184400	Enhancers	Fetal Intestine Small	intestine
3	chr10:23182200-23184600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:23182200-23184600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:23182600-23184400	Enhancers	Brain Hippocampus Middle	brain
6	chr10:23182800-23184600	Enhancers	K562	blood
7	chr10:23183000-23184400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:23183400-23184200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:23183400-23184400	Enhancers	Brain Anterior Caudate	brain
10	chr10:23183400-23184400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:23183400-23184400	Enhancers	Brain Substantia Nigra	brain
12	chr10:23183400-23184400	Enhancers	Placenta	Placenta
13	chr10:23183400-23184400	Enhancers	HMEC	breast
14	chr10:23183600-23184200	Enhancers	NHEK	skin
15	chr10:23183600-23184400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:23183600-23184400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:23183600-23184400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:23183600-23184400	Enhancers	Esophagus	oesophagus
19	chr10:23183600-23184400	Enhancers	Spleen	Spleen
20	chr10:23183600-23184600	Enhancers	Brain Cingulate Gyrus	brain
21	chr10:23183800-23184400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr10:23183800-23184400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr10:23183800-23184400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr10:23184000-23184200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:23184000-23184400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr10:23184000-23184400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:23184000-23184400	Enhancers	Right Atrium	heart

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