Variant report

Variant	rs12246812
Chromosome Location	chr10:23304410-23304411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23303236..23310250-chr10:23341340..23346193,13	K562	blood:
2	chr10:23302995..23309769-chr10:23341340..23346193,8	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11013241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013243	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013286	1.00[EUR][1000 genomes]
rs11013313	1.00[EUR][1000 genomes]
rs11013314	1.00[EUR][1000 genomes]
rs11815995	1.00[EUR][1000 genomes]
rs12240604	1.00[EUR][1000 genomes]
rs12244149	1.00[EUR][1000 genomes]
rs12244692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12246196	1.00[EUR][1000 genomes]
rs12248042	1.00[EUR][1000 genomes]
rs12251091	1.00[EUR][1000 genomes]
rs12252677	1.00[EUR][1000 genomes]
rs12253547	1.00[EUR][1000 genomes]
rs12255738	1.00[EUR][1000 genomes]
rs12259381	1.00[EUR][1000 genomes]
rs12263261	1.00[EUR][1000 genomes]
rs12264254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12267589	1.00[EUR][1000 genomes]
rs12269406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12414753	1.00[EUR][1000 genomes]
rs12415049	1.00[EUR][1000 genomes]
rs1555803	1.00[EUR][1000 genomes]
rs1555804	1.00[EUR][1000 genomes]
rs16923022	1.00[EUR][1000 genomes]
rs16923107	1.00[EUR][1000 genomes]
rs28787441	1.00[EUR][1000 genomes]
rs35010365	1.00[EUR][1000 genomes]
rs58872155	1.00[EUR][1000 genomes]
rs60119752	1.00[EUR][1000 genomes]
rs61136507	1.00[EUR][1000 genomes]
rs61416838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7067788	1.00[EUR][1000 genomes]
rs7070873	1.00[EUR][1000 genomes]
rs7358042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121763	1.00[EUR][1000 genomes]
rs74121767	1.00[EUR][1000 genomes]
rs74121787	1.00[EUR][1000 genomes]
rs74124511	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7916862	1.00[EUR][1000 genomes]
rs9943348	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975810	chr10:23302287-23306366	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3395856	chr10:23304321-23304509	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23301400-23311200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:23304000-23304600	Flanking Active TSS	GM12878-XiMat	blood
3	chr10:23304000-23305400	Enhancers	K562	blood

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