Variant report

Variant	rs7067788
Chromosome Location	chr10:23386339-23386340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:23343262..23345013-chr10:23385017..23389962,4	K562	blood:
2	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:
3	chr10:23375787..23377913-chr10:23385047..23387956,2	MCF-7	breast:
4	chr10:23381002..23382759-chr10:23384583..23386514,2	MCF-7	breast:
5	chr10:23384510..23386607-chr10:23394360..23397420,4	MCF-7	breast:
6	chr10:23384382..23387002-chr10:23390906..23394349,4	MCF-7	breast:
7	chr10:23386053..23388317-chr10:23404216..23407147,2	K562	blood:
8	chr10:23385255..23386926-chr10:23401096..23404039,2	K562	blood:
9	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11013241	1.00[EUR][1000 genomes]
rs11013243	1.00[EUR][1000 genomes]
rs11013286	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013313	1.00[EUR][1000 genomes]
rs11013314	1.00[EUR][1000 genomes]
rs11013345	1.00[EUR][1000 genomes]
rs11013346	1.00[EUR][1000 genomes]
rs11815995	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12240604	1.00[EUR][1000 genomes]
rs12240815	1.00[EUR][1000 genomes]
rs12242101	1.00[EUR][1000 genomes]
rs12244149	1.00[EUR][1000 genomes]
rs12244692	1.00[EUR][1000 genomes]
rs12246196	1.00[EUR][1000 genomes]
rs12246812	1.00[EUR][1000 genomes]
rs12248042	1.00[EUR][1000 genomes]
rs12251091	1.00[EUR][1000 genomes]
rs12252677	1.00[EUR][1000 genomes]
rs12253547	1.00[EUR][1000 genomes]
rs12255738	1.00[EUR][1000 genomes]
rs12257110	1.00[EUR][1000 genomes]
rs12259381	1.00[EUR][1000 genomes]
rs12263261	1.00[EUR][1000 genomes]
rs12264254	1.00[EUR][1000 genomes]
rs12264628	1.00[EUR][1000 genomes]
rs12265525	1.00[EUR][1000 genomes]
rs12267589	1.00[EUR][1000 genomes]
rs12269034	1.00[EUR][1000 genomes]
rs12269406	1.00[EUR][1000 genomes]
rs12414753	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12415049	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1555803	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1555804	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923009	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16923022	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923031	0.88[AMR][1000 genomes]
rs16923107	1.00[EUR][1000 genomes]
rs28787441	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35010365	1.00[EUR][1000 genomes]
rs4130996	1.00[EUR][1000 genomes]
rs4381280	0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57028408	1.00[EUR][1000 genomes]
rs58872155	1.00[EUR][1000 genomes]
rs60119752	1.00[EUR][1000 genomes]
rs60278719	1.00[EUR][1000 genomes]
rs61136507	1.00[EUR][1000 genomes]
rs61416838	1.00[EUR][1000 genomes]
rs7358042	1.00[EUR][1000 genomes]
rs74121763	1.00[EUR][1000 genomes]
rs74121767	1.00[EUR][1000 genomes]
rs74121787	1.00[EUR][1000 genomes]
rs74124511	1.00[EUR][1000 genomes]
rs74124519	1.00[EUR][1000 genomes]
rs74124521	1.00[EUR][1000 genomes]
rs74124522	1.00[EUR][1000 genomes]
rs74124523	1.00[EUR][1000 genomes]
rs7909957	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7916862	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9943348	1.00[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23383400-23386400	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr10:23384200-23386400	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr10:23384800-23386600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:23385000-23386600	Flanking Active TSS	Stomach Smooth Muscle	stomach
5	chr10:23385200-23386400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr10:23385200-23386400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr10:23385200-23386400	Flanking Active TSS	Fetal Lung	lung
8	chr10:23385200-23386400	Flanking Active TSS	Dnd41	blood
9	chr10:23385200-23386400	Flanking Active TSS	Osteobl	bone
10	chr10:23385200-23386600	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr10:23385200-23386600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr10:23385200-23386600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr10:23385400-23386400	Enhancers	Primary B cells from peripheral blood	blood
14	chr10:23385400-23386400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr10:23385400-23386400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:23385400-23386400	Flanking Active TSS	Colon Smooth Muscle	Colon
17	chr10:23385400-23386400	Enhancers	Ovary	ovary
18	chr10:23385400-23386400	Flanking Active TSS	NHEK	skin
19	chr10:23385600-23386400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:23385600-23386400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:23385600-23386400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:23385600-23386400	Flanking Active TSS	Fetal Kidney	kidney
23	chr10:23385600-23386400	Enhancers	Placenta	Placenta
24	chr10:23385600-23386400	Enhancers	Pancreas	Pancrea
25	chr10:23385600-23386400	Enhancers	Stomach Mucosa	stomach
26	chr10:23385600-23386400	Flanking Active TSS	GM12878-XiMat	blood
27	chr10:23385600-23386600	Enhancers	H9 Cell Line	embryonic stem cell
28	chr10:23385600-23386600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:23385600-23386600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr10:23385600-23386600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:23385600-23386600	Flanking Active TSS	Hela-S3	cervix
32	chr10:23385600-23386800	Enhancers	Psoas Muscle	Psoas
33	chr10:23385600-23390200	Enhancers	Small Intestine	intestine
34	chr10:23385800-23386400	Enhancers	H1 Cell Line	embryonic stem cell
35	chr10:23385800-23386400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:23385800-23386400	Enhancers	Primary B cells from cord blood	blood
37	chr10:23385800-23386400	Enhancers	Esophagus	oesophagus
38	chr10:23385800-23386400	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr10:23385800-23386400	Enhancers	HSMMtube	muscle
40	chr10:23385800-23386400	Enhancers	HUVEC	blood vessel
41	chr10:23385800-23386600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr10:23385800-23386600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:23385800-23386600	Enhancers	Fetal Muscle Leg	muscle
44	chr10:23385800-23386600	Enhancers	Fetal Stomach	stomach
45	chr10:23385800-23387200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:23385800-23389200	Enhancers	Liver	Liver
47	chr10:23385800-23393200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:23385800-23393400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:23385800-23395600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:23385800-23401800	Weak transcription	Brain Germinal Matrix	brain

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