Variant report

Variant	rs1555804
Chromosome Location	chr10:23393066-23393067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:23392970-23393163	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr10:23392835-23393099	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:
2	chr10:23384382..23387002-chr10:23390906..23394349,4	MCF-7	breast:
3	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:

Variant related genes	Relation type
MSRB2	TF binding region
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11013241	1.00[EUR][1000 genomes]
rs11013243	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11013286	0.84[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013313	1.00[EUR][1000 genomes]
rs11013314	1.00[EUR][1000 genomes]
rs11013345	1.00[EUR][1000 genomes]
rs11013346	1.00[EUR][1000 genomes]
rs11595935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11815995	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240604	1.00[EUR][1000 genomes]
rs12240815	1.00[EUR][1000 genomes]
rs12242101	1.00[EUR][1000 genomes]
rs12244149	1.00[EUR][1000 genomes]
rs12244692	1.00[EUR][1000 genomes]
rs12246196	1.00[EUR][1000 genomes]
rs12246812	1.00[EUR][1000 genomes]
rs12248042	1.00[EUR][1000 genomes]
rs12251091	1.00[EUR][1000 genomes]
rs12252677	1.00[EUR][1000 genomes]
rs12253547	1.00[EUR][1000 genomes]
rs12255738	1.00[EUR][1000 genomes]
rs12257110	1.00[EUR][1000 genomes]
rs12259381	1.00[EUR][1000 genomes]
rs12263261	1.00[EUR][1000 genomes]
rs12264254	1.00[EUR][1000 genomes]
rs12264628	1.00[EUR][1000 genomes]
rs12265525	1.00[EUR][1000 genomes]
rs12267589	1.00[EUR][1000 genomes]
rs12269034	1.00[EUR][1000 genomes]
rs12269212	1.00[TSI][hapmap]
rs12269406	1.00[EUR][1000 genomes]
rs12414753	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12415049	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1555800	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs1555801	0.85[AFR][1000 genomes]
rs1555803	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923009	0.86[AMR][1000 genomes]
rs16923022	0.84[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16923107	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1975958	0.82[LWK][hapmap];0.84[YRI][hapmap]
rs1975959	0.80[AFR][1000 genomes]
rs2147941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs28787441	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35010365	1.00[EUR][1000 genomes]
rs3793757	0.86[AFR][1000 genomes]
rs4130996	1.00[EUR][1000 genomes]
rs4381280	0.86[AMR][1000 genomes]
rs56201167	0.84[AFR][1000 genomes]
rs57028408	1.00[EUR][1000 genomes]
rs58872155	1.00[EUR][1000 genomes]
rs60119752	1.00[EUR][1000 genomes]
rs60278719	1.00[EUR][1000 genomes]
rs61136507	1.00[EUR][1000 genomes]
rs61416838	1.00[EUR][1000 genomes]
rs7067788	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358042	1.00[EUR][1000 genomes]
rs74121763	1.00[EUR][1000 genomes]
rs74121767	1.00[EUR][1000 genomes]
rs74121787	1.00[EUR][1000 genomes]
rs74124511	1.00[EUR][1000 genomes]
rs74124519	1.00[EUR][1000 genomes]
rs74124521	1.00[EUR][1000 genomes]
rs74124522	1.00[EUR][1000 genomes]
rs74124523	1.00[EUR][1000 genomes]
rs7909957	0.91[MEX][hapmap]
rs7916862	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9943348	1.00[EUR][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23385800-23393200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:23385800-23393400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:23385800-23395600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:23385800-23401800	Weak transcription	Brain Germinal Matrix	brain
5	chr10:23385800-23409400	Weak transcription	NH-A	brain
6	chr10:23386000-23393200	Weak transcription	Gastric	stomach
7	chr10:23386000-23393200	Weak transcription	Thymus	Thymus
8	chr10:23386000-23393200	Weak transcription	Spleen	Spleen
9	chr10:23386000-23412000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:23386200-23393200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:23386200-23393200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:23386400-23393200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:23386400-23393200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:23386400-23393200	Weak transcription	Placenta	Placenta
15	chr10:23386400-23393200	Weak transcription	Right Ventricle	heart
16	chr10:23386400-23393400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:23386400-23393600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:23386400-23394600	Weak transcription	HSMMtube	muscle
19	chr10:23386400-23395400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:23386400-23395600	Weak transcription	Pancreas	Pancrea
21	chr10:23386400-23409600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:23386400-23411200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr10:23386400-23411200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr10:23386600-23393200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:23386600-23393200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:23386600-23393200	Weak transcription	Aorta	Aorta
27	chr10:23386600-23393200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr10:23386600-23393200	Weak transcription	Osteobl	bone
29	chr10:23386600-23393400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr10:23386600-23393400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:23386600-23393400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr10:23386600-23393600	Weak transcription	NHLF	lung
33	chr10:23386600-23394600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:23386600-23397800	Weak transcription	NHDF-Ad	bronchial
35	chr10:23386600-23398000	Weak transcription	GM12878-XiMat	blood
36	chr10:23386600-23400600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:23386600-23401800	Weak transcription	Fetal Brain Male	brain
38	chr10:23386600-23403600	Weak transcription	Fetal Brain Female	brain
39	chr10:23386600-23407800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:23386600-23410600	Weak transcription	Fetal Thymus	thymus
41	chr10:23386600-23412200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:23387200-23411400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:23387400-23393200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:23387800-23393800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:23388000-23393200	Weak transcription	Adipose Nuclei	Adipose
46	chr10:23388000-23393200	Weak transcription	Colon Smooth Muscle	Colon
47	chr10:23388200-23393200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:23388400-23393200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:23388800-23393200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:23388800-23405200	Weak transcription	Psoas Muscle	Psoas

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