Variant report

Variant	rs1975958
Chromosome Location	chr10:23387293-23387294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23343262..23345013-chr10:23385017..23389962,4	K562	blood:
2	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:
3	chr10:23375787..23377913-chr10:23385047..23387956,2	MCF-7	breast:
4	chr10:23386053..23388317-chr10:23404216..23407147,2	K562	blood:
5	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:

Variant related genes	Relation type
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11013286	1.00[YRI][hapmap]
rs11593017	0.81[ASN][1000 genomes]
rs11817587	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12413082	0.93[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1555800	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1555801	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1555803	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs1555804	0.82[LWK][hapmap];0.84[YRI][hapmap]
rs1555805	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16923014	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16923022	1.00[YRI][hapmap]
rs1975959	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147940	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2147945	0.89[ASN][1000 genomes]
rs2274259	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2296467	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2886428	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3793756	0.98[EUR][1000 genomes]
rs3793757	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55656603	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56201167	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59658981	0.99[EUR][1000 genomes]
rs61244168	0.99[EUR][1000 genomes]
rs61849886	0.86[EUR][1000 genomes]
rs61849887	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61849888	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61849889	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6482253	0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7084426	0.90[ASN][1000 genomes]
rs7094224	1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.99[EUR][1000 genomes]
rs7094823	1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.99[EUR][1000 genomes]
rs722258	0.87[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7916862	0.84[LWK][hapmap];0.82[MKK][hapmap];0.87[YRI][hapmap]
rs7919629	0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23385600-23390200	Enhancers	Small Intestine	intestine
2	chr10:23385800-23389200	Enhancers	Liver	Liver
3	chr10:23385800-23393200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:23385800-23393400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:23385800-23395600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:23385800-23401800	Weak transcription	Brain Germinal Matrix	brain
7	chr10:23385800-23409400	Weak transcription	NH-A	brain
8	chr10:23386000-23387800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:23386000-23387800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:23386000-23388000	Enhancers	Fetal Heart	heart
11	chr10:23386000-23388200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr10:23386000-23388400	Enhancers	HepG2	liver
13	chr10:23386000-23388600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:23386000-23388600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:23386000-23388600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:23386000-23388600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:23386000-23389200	Enhancers	Brain Substantia Nigra	brain
18	chr10:23386000-23393000	Weak transcription	HSMM	muscle
19	chr10:23386000-23393200	Weak transcription	Gastric	stomach
20	chr10:23386000-23393200	Weak transcription	Thymus	Thymus
21	chr10:23386000-23393200	Weak transcription	Spleen	Spleen
22	chr10:23386000-23412000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr10:23386200-23387600	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr10:23386200-23388200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:23386200-23388200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:23386200-23388600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:23386200-23388800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr10:23386200-23393000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr10:23386200-23393200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:23386200-23393200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:23386400-23387400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr10:23386400-23387400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:23386400-23387400	Enhancers	Colon Smooth Muscle	Colon
34	chr10:23386400-23387400	Weak transcription	Ovary	ovary
35	chr10:23386400-23387400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:23386400-23387600	ZNF genes & repeats	Fetal Lung	lung
37	chr10:23386400-23387800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr10:23386400-23388000	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr10:23386400-23388000	Weak transcription	Stomach Mucosa	stomach
40	chr10:23386400-23388400	Weak transcription	HUVEC	blood vessel
41	chr10:23386400-23388800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:23386400-23388800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:23386400-23388800	Weak transcription	Fetal Kidney	kidney
44	chr10:23386400-23389600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr10:23386400-23393000	Weak transcription	Esophagus	oesophagus
46	chr10:23386400-23393000	Weak transcription	Lung	lung
47	chr10:23386400-23393200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:23386400-23393200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:23386400-23393200	Weak transcription	Placenta	Placenta
50	chr10:23386400-23393200	Weak transcription	Right Ventricle	heart

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