The 2.0 version of rSNPBase

Variant report

Variant rs1975959
Chromosome Location chr10:23387323-23387324
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:23385600-23390200 Enhancers Small Intestine intestine
2 chr10:23385800-23389200 Enhancers Liver Liver
3 chr10:23385800-23393200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr10:23385800-23393400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr10:23385800-23395600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr10:23385800-23401800 Weak transcription Brain Germinal Matrix brain
7 chr10:23385800-23409400 Weak transcription NH-A brain
8 chr10:23386000-23387800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr10:23386000-23387800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr10:23386000-23388000 Enhancers Fetal Heart heart
11 chr10:23386000-23388200 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr10:23386000-23388400 Enhancers HepG2 liver
13 chr10:23386000-23388600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr10:23386000-23388600 Weak transcription iPS-18 Cell Line embryonic stem cell
15 chr10:23386000-23388600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr10:23386000-23388600 Weak transcription Placenta Amnion Placenta Amnion
17 chr10:23386000-23389200 Enhancers Brain Substantia Nigra brain
18 chr10:23386000-23393000 Weak transcription HSMM muscle
19 chr10:23386000-23393200 Weak transcription Gastric stomach
20 chr10:23386000-23393200 Weak transcription Thymus Thymus
21 chr10:23386000-23393200 Weak transcription Spleen Spleen
22 chr10:23386000-23412000 Weak transcription Pancreatic Islets Pancreatic Islet
23 chr10:23386200-23387600 Enhancers Primary neutrophils fromperipheralblood blood
24 chr10:23386200-23388200 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr10:23386200-23388200 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr10:23386200-23388600 Weak transcription iPS-20b Cell Line embryonic stem cell
27 chr10:23386200-23388800 Weak transcription HUES64 Cell Line embryonic stem cell
28 chr10:23386200-23393000 Weak transcription Fetal Muscle Trunk muscle
29 chr10:23386200-23393200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr10:23386200-23393200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr10:23386400-23387400 Enhancers Primary T helper naive cells fromperipheralblood blood
32 chr10:23386400-23387400 Weak transcription Brain Cingulate Gyrus brain
33 chr10:23386400-23387400 Enhancers Colon Smooth Muscle Colon
34 chr10:23386400-23387400 Weak transcription Ovary ovary
35 chr10:23386400-23387400 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr10:23386400-23387600 ZNF genes & repeats Fetal Lung lung
37 chr10:23386400-23387800 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr10:23386400-23388000 Enhancers Sigmoid Colon Sigmoid Colon
39 chr10:23386400-23388000 Weak transcription Stomach Mucosa stomach
40 chr10:23386400-23388400 Weak transcription HUVEC blood vessel
41 chr10:23386400-23388800 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr10:23386400-23388800 Weak transcription Fetal Adrenal Gland Adrenal Gland
43 chr10:23386400-23388800 Weak transcription Fetal Kidney kidney
44 chr10:23386400-23389600 Weak transcription Primary hematopoietic stem cells blood
45 chr10:23386400-23393000 Weak transcription Esophagus oesophagus
46 chr10:23386400-23393000 Weak transcription Lung lung
47 chr10:23386400-23393200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr10:23386400-23393200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr10:23386400-23393200 Weak transcription Placenta Placenta
50 chr10:23386400-23393200 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015