Variant report

Variant	rs55656603
Chromosome Location	chr10:23384238-23384239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr10:23384193-23384809	A549	lung:	n/a	n/a
2	SP1	chr10:23384064-23384662	H1-hESC	embryonic stem cell:	n/a	chr10:23384293-23384302 chr10:23384381-23384392 chr10:23384294-23384303 chr10:23384292-23384304 chr10:23384294-23384303 chr10:23384343-23384354 chr10:23384326-23384337 chr10:23384355-23384366 chr10:23384366-23384377
3	YY1	chr10:23384200-23384729	H1-hESC	embryonic stem cell:	n/a	chr10:23384680-23384689 chr10:23384681-23384695 chr10:23384675-23384689 chr10:23384677-23384686 chr10:23384672-23384686 chr10:23384677-23384688
4	BHLHE40	chr10:23383872-23384669	K562	blood:	n/a	n/a
5	SP1	chr10:23384196-23384560	H1-hESC	embryonic stem cell:	n/a	chr10:23384293-23384302 chr10:23384381-23384392 chr10:23384294-23384303 chr10:23384292-23384304 chr10:23384294-23384303 chr10:23384343-23384354 chr10:23384326-23384337 chr10:23384355-23384366 chr10:23384366-23384377
6	YY1	chr10:23384221-23384896	HepG2	liver:	n/a	chr10:23384680-23384689 chr10:23384681-23384695 chr10:23384675-23384689 chr10:23384677-23384686 chr10:23384672-23384686 chr10:23384677-23384688
7	EGR1	chr10:23384105-23384605	H1-hESC	embryonic stem cell:	n/a	chr10:23384378-23384392 chr10:23384363-23384377
8	RCOR1	chr10:23383882-23384738	K562	blood:	n/a	n/a
9	CREB1	chr10:23384115-23384759	A549	lung:	n/a	n/a
10	EGR1	chr10:23384030-23384730	K562	blood:	n/a	chr10:23384378-23384392 chr10:23384676-23384686 chr10:23384363-23384377
11	TAF1	chr10:23384224-23385329	H1-hESC	embryonic stem cell:	n/a	n/a
12	ARID3A	chr10:23384223-23384873	HepG2	liver:	n/a	n/a
13	CHD2	chr10:23384028-23384568	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr10:23384189-23384769	H1-neurons	neurons:	n/a	n/a
15	SPI1	chr10:23384127-23384301	K562	blood:	n/a	chr10:23384141-23384154
16	MAZ	chr10:23383965-23385353	K562	blood:	n/a	chr10:23384789-23384799
17	ELF1	chr10:23384238-23384623	K562	blood:	n/a	n/a
18	POLR2A	chr10:23384199-23384661	K562	blood:	n/a	n/a
19	MYC	chr10:23383901-23385107	K562	blood:	n/a	chr10:23384789-23384799
20	CREB1	chr10:23384171-23384679	H1-hESC	embryonic stem cell:	n/a	n/a
21	STAT1	chr10:23384183-23384591	GM12878	blood:	n/a	n/a
22	RUNX3	chr10:23384185-23384637	GM12878	blood:	n/a	n/a
23	TCF12	chr10:23384034-23384824	A549	lung:	n/a	n/a
24	POLR2A	chr10:23384191-23385348	K562	blood:	n/a	n/a
25	ZNF143	chr10:23384226-23384698	GM12878	blood:	n/a	n/a
26	SP1	chr10:23384232-23384625	A549	lung:	n/a	chr10:23384293-23384302 chr10:23384381-23384392 chr10:23384294-23384303 chr10:23384292-23384304 chr10:23384294-23384303 chr10:23384343-23384354 chr10:23384326-23384337 chr10:23384355-23384366 chr10:23384366-23384377
27	SP1	chr10:23384195-23384671	GM12878	blood:	n/a	chr10:23384293-23384302 chr10:23384381-23384392 chr10:23384294-23384303 chr10:23384292-23384304 chr10:23384294-23384303 chr10:23384343-23384354 chr10:23384326-23384337 chr10:23384355-23384366 chr10:23384366-23384377
28	MAX	chr10:23384129-23384743	MCF-7	breast:	n/a	n/a
29	POLR2A	chr10:23384174-23385294	ProgFib	skin:	n/a	n/a
30	POLR2A	chr10:23383642-23384943	K562	blood:	n/a	n/a
31	EGR1	chr10:23384131-23384725	MCF-7	breast:	n/a	chr10:23384378-23384392 chr10:23384676-23384686 chr10:23384363-23384377
32	FOXP2	chr10:23384158-23384679	PFSK-1	brain:	n/a	n/a
33	POLR2A	chr10:23384198-23384919	MCF-7	breast:	n/a	n/a
34	NR2F2	chr10:23384193-23384862	MCF-7	breast:	n/a	n/a
35	CEBPD	chr10:23384135-23384803	HepG2	liver:	n/a	n/a
36	MYC	chr10:23384223-23384603	MCF-7	breast:	n/a	n/a
37	POLR2A	chr10:23384202-23384947	Hela-S3	cervix:	n/a	n/a
38	ZBTB7A	chr10:23384095-23385143	K562	blood:	n/a	n/a
39	SP1	chr10:23384093-23384645	A549	lung:	n/a	chr10:23384293-23384302 chr10:23384381-23384392 chr10:23384294-23384303 chr10:23384292-23384304 chr10:23384294-23384303 chr10:23384343-23384354 chr10:23384326-23384337 chr10:23384355-23384366 chr10:23384366-23384377
40	ZKSCAN1	chr10:23384160-23384808	Hela-S3	cervix:	n/a	n/a
41	POLR2A	chr10:23384174-23384918	A549	lung:	n/a	n/a
42	TCF12	chr10:23384216-23384843	ECC-1	luminal epithelium:	n/a	n/a
43	POLR2A	chr10:23384222-23384896	MCF-7	breast:	n/a	n/a
44	ELF1	chr10:23384212-23384672	MCF-7	breast:	n/a	n/a
45	SP4	chr10:23384128-23384589	H1-hESC	embryonic stem cell:	n/a	chr10:23384381-23384392 chr10:23384343-23384354 chr10:23384326-23384337 chr10:23384355-23384366 chr10:23384366-23384377
46	EP300	chr10:23384238-23384547	GM12878	blood:	n/a	n/a
47	POLR2A	chr10:23384221-23385573	HEK293	kidney:	n/a	n/a
48	CHD2	chr10:23384101-23384944	Hela-S3	cervix:	n/a	chr10:23384786-23384796 chr10:23384783-23384793
49	POLR2A	chr10:23383846-23384793	HUVEC	blood vessel:	n/a	n/a
50	TBL1XR1	chr10:23383971-23384782	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:
2	chr10:23362935..23364765-chr10:23383758..23385260,2	K562	blood:
3	chr10:23383560..23385979-chr10:23407851..23409432,2	K562	blood:
4	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:

Variant related genes	Relation type
MSRB2	TF binding region
ENSG00000148450	Chromatin interaction
ENSG00000221221	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11593017	0.82[ASN][1000 genomes]
rs11817587	0.89[ASN][1000 genomes]
rs12413082	0.90[ASN][1000 genomes]
rs1555800	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1555801	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1555805	0.92[ASN][1000 genomes]
rs16923014	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1975958	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1975959	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2147940	0.82[ASN][1000 genomes]
rs2147945	0.89[ASN][1000 genomes]
rs2274259	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2296467	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2886428	0.94[ASN][1000 genomes]
rs3793756	0.99[EUR][1000 genomes]
rs3793757	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56201167	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59658981	0.99[EUR][1000 genomes]
rs61244168	0.99[EUR][1000 genomes]
rs61849886	0.87[EUR][1000 genomes]
rs61849887	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61849888	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61849889	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7084426	0.91[ASN][1000 genomes]
rs7094224	0.99[EUR][1000 genomes]
rs7094823	0.98[EUR][1000 genomes]
rs722258	0.84[ASN][1000 genomes]
rs7919629	0.84[ASN][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23383400-23385200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:23383400-23386400	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr10:23383600-23384600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:23383600-23385000	Active TSS	Stomach Smooth Muscle	stomach
5	chr10:23383600-23385200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:23383600-23385200	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr10:23383600-23385200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:23383600-23385200	Active TSS	Duodenum Mucosa	Duodenum
9	chr10:23383600-23385200	Active TSS	Osteobl	bone
10	chr10:23383600-23385400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:23383600-23385400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:23383600-23385400	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr10:23383600-23385400	Active TSS	NHDF-Ad	bronchial
14	chr10:23383600-23385600	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr10:23383600-23385600	Active TSS	Brain Angular Gyrus	brain
16	chr10:23383600-23385600	Active TSS	Right Atrium	heart
17	chr10:23383600-23385800	Active TSS	Aorta	Aorta
18	chr10:23383800-23384400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr10:23383800-23385000	Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr10:23383800-23385000	Enhancers	Fetal Brain Male	brain
21	chr10:23383800-23385200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:23383800-23385200	Active TSS	Primary T cells from cord blood	blood
23	chr10:23383800-23385200	Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr10:23383800-23385200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr10:23383800-23385200	Active TSS	Fetal Brain Female	brain
26	chr10:23383800-23385200	Active TSS	Fetal Lung	lung
27	chr10:23383800-23385200	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr10:23383800-23385200	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr10:23383800-23385200	Active TSS	NH-A	brain
30	chr10:23383800-23385400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:23383800-23385400	Active TSS	Muscle Satellite Cultured Cells	--
32	chr10:23383800-23385400	Active TSS	Brain Substantia Nigra	brain
33	chr10:23383800-23385400	Active TSS	Colon Smooth Muscle	Colon
34	chr10:23383800-23385400	Active TSS	Ovary	ovary
35	chr10:23383800-23385400	Active TSS	Rectal Smooth Muscle	rectum
36	chr10:23383800-23385400	Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr10:23383800-23385400	Active TSS	HSMMtube	muscle
38	chr10:23383800-23385400	Active TSS	NHEK	skin
39	chr10:23383800-23385600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:23383800-23385600	Active TSS	Colonic Mucosa	Colon
41	chr10:23383800-23385600	Active TSS	Psoas Muscle	Psoas
42	chr10:23383800-23385600	Active TSS	Right Ventricle	heart
43	chr10:23383800-23385600	Active TSS	HSMM	muscle
44	chr10:23383800-23385600	Active TSS	NHLF	lung
45	chr10:23383800-23385800	Active TSS	Brain Germinal Matrix	brain
46	chr10:23384000-23384400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr10:23384000-23384400	Enhancers	Primary B cells from peripheral blood	blood
48	chr10:23384000-23384400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
49	chr10:23384000-23384400	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr10:23384000-23384400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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