Variant report

Variant	rs1555805
Chromosome Location	chr10:23393226-23393227
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:
2	chr10:23384382..23387002-chr10:23390906..23394349,4	MCF-7	breast:
3	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:

Variant related genes	Relation type
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11593017	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11817587	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12413082	0.94[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1555800	0.93[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1555801	0.97[ASN][1000 genomes]
rs16923014	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1975958	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1975959	0.98[ASN][1000 genomes]
rs2147940	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2147945	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2274259	0.88[ASN][1000 genomes]
rs2296467	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2886428	0.84[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3793757	0.88[ASN][1000 genomes]
rs55656603	0.92[ASN][1000 genomes]
rs56201167	0.94[ASN][1000 genomes]
rs61849887	0.84[ASN][1000 genomes]
rs61849888	0.86[ASN][1000 genomes]
rs61849889	0.88[ASN][1000 genomes]
rs6482253	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7084426	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs722258	0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7919629	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23385800-23393400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:23385800-23395600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:23385800-23401800	Weak transcription	Brain Germinal Matrix	brain
4	chr10:23385800-23409400	Weak transcription	NH-A	brain
5	chr10:23386000-23412000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:23386400-23393400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:23386400-23393600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:23386400-23394600	Weak transcription	HSMMtube	muscle
9	chr10:23386400-23395400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:23386400-23395600	Weak transcription	Pancreas	Pancrea
11	chr10:23386400-23409600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:23386400-23411200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr10:23386400-23411200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:23386600-23393400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr10:23386600-23393400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:23386600-23393400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:23386600-23393600	Weak transcription	NHLF	lung
18	chr10:23386600-23394600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:23386600-23397800	Weak transcription	NHDF-Ad	bronchial
20	chr10:23386600-23398000	Weak transcription	GM12878-XiMat	blood
21	chr10:23386600-23400600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:23386600-23401800	Weak transcription	Fetal Brain Male	brain
23	chr10:23386600-23403600	Weak transcription	Fetal Brain Female	brain
24	chr10:23386600-23407800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:23386600-23410600	Weak transcription	Fetal Thymus	thymus
26	chr10:23386600-23412200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr10:23387200-23411400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:23387800-23393800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:23388800-23405200	Weak transcription	Psoas Muscle	Psoas
30	chr10:23389000-23393400	Weak transcription	Brain Angular Gyrus	brain
31	chr10:23389000-23393400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:23389000-23394800	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:23389200-23393600	Weak transcription	Brain Substantia Nigra	brain
34	chr10:23389200-23402200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:23389200-23407400	Weak transcription	Fetal Kidney	kidney
36	chr10:23389400-23393400	Weak transcription	Colonic Mucosa	Colon
37	chr10:23389400-23401200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr10:23389400-23402000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:23389400-23410600	Weak transcription	Stomach Mucosa	stomach
40	chr10:23389600-23393800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:23389600-23395000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:23389600-23409000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr10:23389600-23418600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr10:23389800-23399200	Weak transcription	HepG2	liver
45	chr10:23389800-23403800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr10:23390000-23393400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr10:23390000-23396000	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:23390000-23405600	Weak transcription	NHEK	skin
49	chr10:23390000-23408200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:23390000-23411800	Weak transcription	HUVEC	blood vessel

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